Biologie

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways

Gruber, Andreas J.; Grandy, William A.; Balwierz, Piotr J.; Dimitrova, Yoana A.; Pachkov, Mikhail; Ciaudo, Constance; Nimwegen, Erik van; Zavolan, Mihaela (2014) - Journal article
Published in: Nucleic acids research ; 42 (2014), 14. - pp. 9313-9326. - PubMed Central. - ISSN 0301-5610. - eISSN 1362-4962

(4.5 MiB)

Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC

Gruber, Andreas J.; Schmidt, Ralf; Ghosh, Souvik; Martin, Georges; Gruber, Andreas R.; van Nimwegen, Erik; Zavolan, Mihaela (2018) - Journal article
Published in: Genome biology ; 19 (2018), 1. - 44. - BioMed Central. - ISSN 1465-6906. - eISSN 1465-6914

(1.5 MiB)

ISMARA : automated modeling of genomic signals as a democracy of regulatory motifs

Balwierz, Piotr J.; Pachkov, Mikhail; Arnold, Phil; Gruber, Andreas J.; Zavolan, Mihaela; van Nimwegen, Erik (2014) - Journal article
Published in: Genome research ; 24 (2014), 5. - pp. 869-884. - Cold Spring Harbor Laboratory Press. - ISSN 1054-9803. - eISSN 1549-5469

(894.1 KiB)

Identification of a 3-Alkylpyridinium Compound from the Red Sea Sponge Amphimedon chloros with In Vitro Inhibitory Activity against the West Nile Virus NS3 Protease

O'Rourke, Aubrie; Kremb, Stephan; Duggan, Brendan M.; Sioud, Salim; Kharbatia, Najeh; Raji, Misjudeen; Emwas, Abdul-Hamid; Gerwick, William H.; Voolstra, Christian R. (2018) - Journal article
Published in: Molecules : A Journal of Synthetic Chemistry and Natural Product Chemistry ; 23 (2018), 6. - 1472. - Molecular Diversity Preservation International (MDPI). - eISSN 1420-3049

(473.3 KiB)

Ecological and molecular characterization of a coral black band disease outbreak in the Red Sea during a bleaching event

Hadaidi, Ghaida; Ziegler, Maren; Shore-Maggio, Amanda; Jensen, Thor; Aeby, Greta; Voolstra, Christian R. (2018) - Journal article
Published in: PeerJ ; 6 (2018). - e5169. - PeerJ. - eISSN 2167-8359

(1.3 MiB)

Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells

Gruber, Andreas R.; Martin, Georges; Müller, Philipp; Schmidt, Alexander; Gruber, Andreas J.; Gumienny, Rafal; Mittal, Nitish; Jayachandran, Rajesh; Pieters, Jean; Zavolan, Mihaela et al. (2014) - Journal article
Published in: Nature Communications ; 5 (2014), 1. - 5465. - Nature Publishing Group. - eISSN 2041-1723

(2.7 MiB)

The conserved WW-domain binding sites in Dystroglycan C-terminus are essential but partially redundant for Dystroglycan function

Yatsenko, Andriy S.; Kucherenko, Mariya M.; Pantoja, Mario; Fischer, Kevin A.; Madeoy, Jennifer; Deng, Wu-Min; Schneider, M.; Baumgartner, Stefan; Shcherbata, Halyna; Ruohola-Baker, Hannele et al. (2009) - Journal article
Published in: BMC Developmental Biology ; 9 (2009), 1. - 18. - BioMed Central. - eISSN 1471-213X

(662.2 KiB)

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

Liu, Huanle; Stephens, Timothy G.; González-Pech, Raúl A.; Beltran, Victor H.; Lapeyre, Bruno; Bongaerts, Pim; Cooke, Ira; Aranda, Manuel; Voolstra, Christian R.; Chan, Cheong Xin et al. (2018) - Journal article
Published in: Communications biology ; 2018, 1. - 95. - Springer Nature. - eISSN 2399-3642

(3.1 MiB)

Range-dependent flexibility in the acoustic field of view of echolocating porpoises (Phocoena phocoena)

Wisniewska, Danuta M.; Ratcliffe, John M.; Beedholm, Kristian; Christensen, Christian B.; Johnson, Mark; Koblitz, Jens C.; Wahlberg, Magnus; Madsen, Peter T. (2015) - Journal article
Published in: eLife ; 4 (2015). - e05651. - eLife Sciences Publications. - eISSN 2050-084X

(1.1 MiB)

Defining management units for cetaceans by combining genetics, morphology, acoustics and satellite tracking

Sveegaard, Signe; Galatius, Anders; Dietz, Rune; Kyhn, Line; Koblitz, Jens C.; Amundin, Mats; Nabe-Nielsen, Jacob; Sinding, Mikkel-Holger S.; Andersen, Liselotte W.; Teilmann, Jonas (2015) - Journal article
Published in: Global Ecology and Conservation ; 3 (2015). - pp. 839-850. - Elsevier. - ISSN 2351-9894

(4 MiB)

Comparing Distribution of Harbour Porpoises (Phocoena phocoena) Derived from Satellite Telemetry and Passive Acoustic Monitoring

Mikkelsen, Lonnie; Rigét, Frank F.; Kyhn, Line A.; Sveegaard, Signe; Dietz, Rune; Tougaard, Jakob; Carlström, Julia A. K.; Carlén, Ida; Koblitz, Jens C.; Teilmann, Jonas (2016) - Journal article
Published in: PloS ONE ; 11 (2016), 7. - e0158788. - Public Library of Science (PLoS). - eISSN 1932-6203

(949.7 KiB)

Evolution and connectivity in the world-wide migration system of the mallard : inferences from mitochondrial DNA

Kraus, Robert H.S.; Zeddeman, Anne; van Hooft, Pim; Sartakov, Dmitry; Soloviev, Sergei A.; Ydenberg, Ronald C.; Prins, Herbert H. T. (2011) - Journal article
Published in: BMC genetics ; 12 (2011). - 99. - BioMed Central. - eISSN 1471-2156

(1.7 MiB)

The development of a genome wide SNP set for the Barnacle goose Branta leucopsis

Jonker, Rudy M.; Zhang, Qiong; van Hooft, Pim; Loonen, Maarten J. J. E.; van der Jeugd, Henk P.; Crooijmans, Richard P. M. A.; Groenen, Martien A. M.; Prins, Herbert H. T.; Kraus, Robert H. S. (2012) - Journal article
Published in: PloS ONE ; 7 (2012), 7. - e38412. - Public Library of Science (PLoS). - eISSN 1932-6203

(25.8 MiB)

αTubulin 67C and Ncd are essential for establishing a cortical microtubular network and formation of the Bicoid mRNA gradient in Drosophila

Fahmy, Khalid; Akber, Mira; Cai, Xiaoli; Koul, Aabid; Hayder, Awais; Baumgartner, Stefan (2014) - Journal article
Published in: PloS ONE ; 9 (2014), 11. - e112053. - Public Library of Science (PLoS). - eISSN 1932-6203

(279.2 KiB)

Expression analysis of a family of developmentally-regulated cytosolic sulfotransferases (SULTs) in Drosophila

Fahmy, Khalid; Baumgartner, Stefan (2013) - Journal article
Published in: Hereditas ; 150 (2013), 2-3. - pp. 44-48. - Wiley-Blackwell. - ISSN 0018-0661. - eISSN 1601-5223

(547.9 KiB)

The role of floridoside in osmoadaptation of coral-associated algal endosymbionts to high-salinity conditions

Ochsenkühn, Michael A.; Röthig, Till; D'Angelo, Cecilia; Wiedenmann, Jörg; Voolstra, Christian R. (2017) - Journal article
Published in: Science advances ; 3 (2017), 8. - e1602047. - American Association for the Advancement of Science (AAAS). - eISSN 2375-2548

(7.1 MiB)

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

Hölzer, Martin; Krähling, Verena; Amman, Fabian; Barth, Emanuel; Bernhart, Stephan H.; Carmelo, Victor A. O.; Collatz, Maximilian; Doose, Gero; Gruber, Andreas J.; Wehner, Stefanie et al. (2016) - Journal article
Published in: Scientific Reports ; 6 (2016), 1. - 34589. - Springer Nature. - eISSN 2045-2322

(1.5 MiB)

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

Kanitz, Alexander; Gypas, Foivos; Gruber, Andreas J.; Gruber, Andreas R.; Martin, Georges; Zavolan, Mihaela (2015) - Journal article
Published in: Genome Biology ; 16 (2015), 1. - 150. - BioMed Central. - ISSN 1465-6906. - eISSN 1465-6914

(1.7 MiB)

Single‐cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction

Rzepiela, Andrzej J.; Ghosh, Souvik; Breda, Jeremie; Vina-Vilaseca, Arnau; Syed, Afzal P.; Gruber, Andreas J.; Eschbach, Katja; Beisel, Christian; Nimwegen, Erik; Zavolan, Mihaela (2018) - Journal article
Published in: Molecular Systems Biology ; 14 (2018), 8. - e8266. - Wiley. - eISSN 1744-4292