Software support for SBGN maps : SBGN-ML and LibSBGN

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dc.contributor.authorvan Iersel, Martijn P.
dc.contributor.authorVilleger, Alice C.
dc.contributor.authorCzauderna, Tobias
dc.contributor.authorBoyd, Sarah E.
dc.contributor.authorBergmann, Frank T.
dc.contributor.authorLuna, Augustin
dc.contributor.authorDemir, Emek
dc.contributor.authorSorokin, Anatoly
dc.contributor.authorDogrusoz, Ugur
dc.contributor.authorSchreiber, Falk
dc.date.accessioned2017-04-19T09:42:58Z
dc.date.available2017-04-19T09:42:58Z
dc.date.issued2012-08-01eng
dc.description.abstractLibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format. The library (available in C++ and Java) makes it easy for developers to add SBGN support to their tools, whereas the file format facilitates the exchange of maps between compatible software applications. The library also supports validation of maps, which simplifies the task of ensuring compliance with the detailed SBGN specifications. With this effort we hope to increase the adoption of SBGN in bioinformatics tools, ultimately enabling more researchers to visualize biological knowledge in a precise and unambiguous manner.eng
dc.description.versionpublishedeng
dc.identifier.doi10.1093/bioinformatics/bts270eng
dc.identifier.pmid22581176eng
dc.identifier.ppn486694739
dc.identifier.urihttps://kops.uni-konstanz.de/handle/123456789/38524
dc.language.isoengeng
dc.rightsAttribution-NonCommercial 3.0 Unported
dc.rights.urihttp://creativecommons.org/licenses/by-nc/3.0
dc.subject.ddc004eng
dc.titleSoftware support for SBGN maps : SBGN-ML and LibSBGNeng
dc.typeJOURNAL_ARTICLEeng
dspace.entity.typePublication
kops.citation.bibtex
@article{vanIersel2012-08-01Softw-38524,
  year={2012},
  doi={10.1093/bioinformatics/bts270},
  title={Software support for SBGN maps : SBGN-ML and LibSBGN},
  number={15},
  volume={28},
  issn={1367-4803},
  journal={Bioinformatics},
  pages={2016--2021},
  author={van Iersel, Martijn P. and Villeger, Alice C. and Czauderna, Tobias and Boyd, Sarah E. and Bergmann, Frank T. and Luna, Augustin and Demir, Emek and Sorokin, Anatoly and Dogrusoz, Ugur and Schreiber, Falk}
}
kops.citation.iso690VAN IERSEL, Martijn P., Alice C. VILLEGER, Tobias CZAUDERNA, Sarah E. BOYD, Frank T. BERGMANN, Augustin LUNA, Emek DEMIR, Anatoly SOROKIN, Ugur DOGRUSOZ, Falk SCHREIBER, 2012. Software support for SBGN maps : SBGN-ML and LibSBGN. In: Bioinformatics. 2012, 28(15), pp. 2016-2021. ISSN 1367-4803. eISSN 1460-2059. Available under: doi: 10.1093/bioinformatics/bts270deu
kops.citation.iso690VAN IERSEL, Martijn P., Alice C. VILLEGER, Tobias CZAUDERNA, Sarah E. BOYD, Frank T. BERGMANN, Augustin LUNA, Emek DEMIR, Anatoly SOROKIN, Ugur DOGRUSOZ, Falk SCHREIBER, 2012. Software support for SBGN maps : SBGN-ML and LibSBGN. In: Bioinformatics. 2012, 28(15), pp. 2016-2021. ISSN 1367-4803. eISSN 1460-2059. Available under: doi: 10.1093/bioinformatics/bts270eng
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kops.sourcefieldBioinformatics. 2012, <b>28</b>(15), pp. 2016-2021. ISSN 1367-4803. eISSN 1460-2059. Available under: doi: 10.1093/bioinformatics/bts270deu
kops.sourcefield.plainBioinformatics. 2012, 28(15), pp. 2016-2021. ISSN 1367-4803. eISSN 1460-2059. Available under: doi: 10.1093/bioinformatics/bts270deu
kops.sourcefield.plainBioinformatics. 2012, 28(15), pp. 2016-2021. ISSN 1367-4803. eISSN 1460-2059. Available under: doi: 10.1093/bioinformatics/bts270eng
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