APL@Voro : Interactive Visualisation and Analysis of Cell Membrane Simulations

Kern, Martin; Jaeger-Honz, Sabrina; Schreiber, Falk; Sommer, Björn

APL@Voro : Interactive Visualisation and Analysis of Cell Membrane Simulations

Dateien

Kern_2-1o5fa52i6s5ut9.PDFGröße: 1.15 MBDownloads: 29

Datum

2023

Publikationstyp

Zeitschriftenartikel

Publikationsstatus

Published

Erschienen in

Bioinformatics. Oxford University Press (OUP). 2023, 39(2), btad083. ISSN 1367-4803. eISSN 1367-4811. Available under: doi: 10.1093/bioinformatics/btad083

Zusammenfassung

Molecular dynamics (MD) simulations of cell membranes allow for a better understanding of complex processes such as changing membrane dynamics, lipid rafts and the incorporation/passing of macromolecules into/through membranes. To explore and understand cell membrane compositions, dynamics and processes, visual analytics can help to interpret MD simulation data. APL@Voro is a software for the interactive visualisation and analysis of cell membrane simulations. Here, we present the new APL@Voro, which has been continuously developed since its initial release in 2013. We discuss newly implemented algorithms, methodologies and features, such as the interactive comparison of related simulations and methods to assign lipids to either the upper or lower leaflet.

Fachgebiet (DDC)

004 Informatik

Schlagwörter

Computational Mathematics, Computational Theory and Mathematics, Computer Science Applications, Molecular Biology, Biochemistry, Statistics and Probability

Zitieren

ISO 690

KERN, Martin, Sabrina JAEGER-HONZ, Falk SCHREIBER, Björn SOMMER, 2023. APL@Voro : Interactive Visualisation and Analysis of Cell Membrane Simulations. In: Bioinformatics. Oxford University Press (OUP). 2023, 39(2), btad083. ISSN 1367-4803. eISSN 1367-4811. Available under: doi: 10.1093/bioinformatics/btad083

BibTex

@article{Kern2023-02-08APLVo-66056,
  year={2023},
  doi={10.1093/bioinformatics/btad083},
  title={APLVoro : Interactive Visualisation and Analysis of Cell Membrane Simulations},
  number={2},
  volume={39},
  issn={1367-4803},
  journal={Bioinformatics},
  author={Kern, Martin and Jaeger-Honz, Sabrina and Schreiber, Falk and Sommer, Björn},
  note={Article Number: btad083}
}

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Begutachtet

Ja