APL@Voro : Interactive Visualisation and Analysis of Cell Membrane Simulations

Lade...
Vorschaubild
Dateien
Kern_2-1o5fa52i6s5ut9.PDF
Kern_2-1o5fa52i6s5ut9.PDFGröße: 1.15 MBDownloads: 51
Datum
2023
Herausgeber:innen
Kontakt
ISSN der Zeitschrift
Electronic ISSN
ISBN
Bibliografische Daten
Verlag
Schriftenreihe
Auflagebezeichnung
ArXiv-ID
Internationale Patentnummer
Link zur Lizenz
Angaben zur Forschungsförderung
Projekt
Open Access-Veröffentlichung
Open Access Gold
Core Facility der Universität Konstanz
Gesperrt bis
Titel in einer weiteren Sprache
Publikationstyp
Zeitschriftenartikel
Publikationsstatus
Published
Erschienen in
Bioinformatics. Oxford University Press (OUP). 2023, 39(2), btad083. ISSN 1367-4803. eISSN 1367-4811. Available under: doi: 10.1093/bioinformatics/btad083
Zusammenfassung

Molecular dynamics (MD) simulations of cell membranes allow for a better understanding of complex processes such as changing membrane dynamics, lipid rafts and the incorporation/passing of macromolecules into/through membranes. To explore and understand cell membrane compositions, dynamics and processes, visual analytics can help to interpret MD simulation data. APL@Voro is a software for the interactive visualisation and analysis of cell membrane simulations. Here, we present the new APL@Voro, which has been continuously developed since its initial release in 2013. We discuss newly implemented algorithms, methodologies and features, such as the interactive comparison of related simulations and methods to assign lipids to either the upper or lower leaflet.

Zusammenfassung in einer weiteren Sprache
Fachgebiet (DDC)
004 Informatik
Schlagwörter
Computational Mathematics, Computational Theory and Mathematics, Computer Science Applications, Molecular Biology, Biochemistry, Statistics and Probability
Konferenz
Rezension
undefined / . - undefined, undefined
Forschungsvorhaben
Organisationseinheiten
Zeitschriftenheft
Datensätze
Zitieren
ISO 690KERN, Martin, Sabrina JAEGER-HONZ, Falk SCHREIBER, Björn SOMMER, 2023. APL@Voro : Interactive Visualisation and Analysis of Cell Membrane Simulations. In: Bioinformatics. Oxford University Press (OUP). 2023, 39(2), btad083. ISSN 1367-4803. eISSN 1367-4811. Available under: doi: 10.1093/bioinformatics/btad083
BibTex
@article{Kern2023-02-08APLVo-66056,
  year={2023},
  doi={10.1093/bioinformatics/btad083},
  title={APLVoro : Interactive Visualisation and Analysis of Cell Membrane Simulations},
  number={2},
  volume={39},
  issn={1367-4803},
  journal={Bioinformatics},
  author={Kern, Martin and Jaeger-Honz, Sabrina and Schreiber, Falk and Sommer, Björn},
  note={Article Number: btad083}
}
RDF
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/66056">
    <dc:creator>Sommer, Björn</dc:creator>
    <dcterms:abstract>Molecular dynamics (MD) simulations of cell membranes allow for a better understanding of complex processes such as changing membrane dynamics, lipid rafts and the incorporation/passing of macromolecules into/through membranes. To explore and understand cell membrane compositions, dynamics and processes, visual analytics can help to interpret MD simulation data. APL@Voro is a software for the interactive visualisation and analysis of cell membrane simulations. Here, we present the new APL@Voro, which has been continuously developed since its initial release in 2013. We discuss newly implemented algorithms, methodologies and features, such as the interactive comparison of related simulations and methods to assign lipids to either the upper or lower leaflet.</dcterms:abstract>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-02-13T08:23:47Z</dcterms:available>
    <dc:contributor>Schreiber, Falk</dc:contributor>
    <dc:contributor>Kern, Martin</dc:contributor>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dcterms:rights rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
    <dcterms:title>APL@Voro : Interactive Visualisation and Analysis of Cell Membrane Simulations</dcterms:title>
    <dc:contributor>Jaeger-Honz, Sabrina</dc:contributor>
    <dc:contributor>Sommer, Björn</dc:contributor>
    <dc:creator>Schreiber, Falk</dc:creator>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/66056/1/Kern_2-1o5fa52i6s5ut9.PDF"/>
    <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/66056/1/Kern_2-1o5fa52i6s5ut9.PDF"/>
    <dcterms:issued>2023-02-08</dcterms:issued>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-02-13T08:23:47Z</dc:date>
    <dc:language>eng</dc:language>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/66056"/>
    <dc:creator>Kern, Martin</dc:creator>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dc:creator>Jaeger-Honz, Sabrina</dc:creator>
    <dc:rights>Attribution 4.0 International</dc:rights>
  </rdf:Description>
</rdf:RDF>
Interner Vermerk
xmlui.Submission.submit.DescribeStep.inputForms.label.kops_note_fromSubmitter
Kontakt
URL der Originalveröffentl.
Prüfdatum der URL
Prüfungsdatum der Dissertation
Finanzierungsart
Kommentar zur Publikation
Allianzlizenz
Corresponding Authors der Uni Konstanz vorhanden
Internationale Co-Autor:innen
Universitätsbibliographie
Ja
Begutachtet
Ja
Diese Publikation teilen