Datensatz:

Research Data: APL@voro - interactive visualization and analysis of cell membrane simulations

Vorschaubild

Datum der Erstveröffentlichung

2024

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Andere Beitragende

Repositorium der Erstveröffentlichung

Universitätsbibliothek Stuttgart

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DOI (Link zu den Daten)
https://doi.org/10.18419/darus-4252
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Deutsche Forschungsgemeinschaft (DFG): 251654672

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Publikationsstatus
Published

Zusammenfassung

Here, we summarise available data and source code regarding the publication "APL@voro—interactive visualization and analysis of cell membrane simulations".

Molecular dynamics (MD) simulations of cell membranes allow for a better understanding of complex processes such as changing membrane dynamics, lipid rafts and the incorporation/passing of macromolecules into/through membranes. To explore and understand cell membrane compositions, dynamics and processes, visual analytics can help to interpret MD simulation data. APL@Voro is a software for the interactive visualization and analysis of cell membrane simulations. Here, we present the new APL@Voro, which has been continuously developed since its initial release in 2013. We discuss newly implemented algorithms, methodologies and features, such as the interactive comparison of related simulations and methods to assign lipids to either the upper or lower leaflet. The software is available open-source at: http://aplvoro.com/. Additional information regarding this dataset can be found in the <a href="https://darus.uni-stuttgart.de/file.xhtml?fileId=299493">README.md</a>.

Zusammenfassung in einer weiteren Sprache

Fachgebiet (DDC)
004 Informatik

Schlagwörter

Computer and Information Science, Medicine, Health and Life Sciences, Molecular Dynamics Simulation, Visual Analytics, Information Visualization, Computer Science

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Publikation
Zeitschriftenartikel
APL@Voro : Interactive Visualisation and Analysis of Cell Membrane Simulations
(2023) Kern, Martin; Jaeger-Honz, Sabrina; Schreiber, Falk; Sommer, Björn
Erschienen in: Bioinformatics. Oxford University Press (OUP). 2023, 39(2), btad083. ISSN 1367-4803. eISSN 1367-4811. Verfügbar unter: doi: 10.1093/bioinformatics/btad083
Link zu zugehöriger Publikation
Link zu zugehörigem Datensatz
https://doi.org/10.18419/darus-4252/7

Zitieren

ISO 690KERN, Martin, Sabrina JAEGER-HONZ, Falk SCHREIBER, Björn SOMMER, 2024. Research Data: APL@voro - interactive visualization and analysis of cell membrane simulations
BibTex
RDF
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Molecular dynamics (MD) simulations of cell membranes allow for a better understanding of complex processes such as changing membrane dynamics, lipid rafts and the incorporation/passing of macromolecules into/through membranes. To explore and understand cell membrane compositions, dynamics and processes, visual analytics can help to interpret MD simulation data. APL@Voro is a software for the interactive visualization and analysis of cell membrane simulations. Here, we present the new APL@Voro, which has been continuously developed since its initial release in 2013. We discuss newly implemented algorithms, methodologies and features, such as the interactive comparison of related simulations and methods to assign lipids to either the upper or lower leaflet. The software is available open-source at: http://aplvoro.com/. 
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