Publikation:

Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity : Overview and Recommendations

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Datum

2021

Autor:innen

Capo, Eric
Giguet-Covex, Charline
Rouillard, Alexandra
Nota, Kevin
Heintzman, Peter D.
Vuillemin, Aurèle
Coolen, Marco J. L.
Domaizon, Isabelle

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Published

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Quaternary. MDPI. 2021, 4(1), 6. eISSN 2571-550X. Available under: doi: 10.3390/quat4010006

Zusammenfassung

The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises.

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Fachgebiet (DDC)
570 Biowissenschaften, Biologie

Schlagwörter

sedimentary ancient DNA; sedimentary DNA; lake sediments; paleolimnology; paleoecology; paleogenetics; paleogenomics; metabarcoding; metagenomics; biodiversity

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ISO 690CAPO, Eric, Charline GIGUET-COVEX, Alexandra ROUILLARD, Kevin NOTA, Peter D. HEINTZMAN, Aurèle VUILLEMIN, Anan IBRAHIM, Marco J. L. COOLEN, Laura S. EPP, Isabelle DOMAIZON, Laura PARDUCCI, 2021. Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity : Overview and Recommendations. In: Quaternary. MDPI. 2021, 4(1), 6. eISSN 2571-550X. Available under: doi: 10.3390/quat4010006
BibTex
@article{Capo2021-03Sedim-53186,
  year={2021},
  doi={10.3390/quat4010006},
  title={Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity : Overview and Recommendations},
  number={1},
  volume={4},
  journal={Quaternary},
  author={Capo, Eric and Giguet-Covex, Charline and Rouillard, Alexandra and Nota, Kevin and Heintzman, Peter D. and Vuillemin, Aurèle and Ibrahim, Anan and Coolen, Marco J. L. and Epp, Laura S. and Domaizon, Isabelle and Parducci, Laura},
  note={Article Number: 6}
}
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