An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism
| Type of Publication: | Contribution to a conference collection |
| Publication status: | Published |
| Author: | Weise, Stephan; Colmsee, Christian; Grafahrend-Belau, Eva; Junker, Björn; Klukas, Christian; Lange, Matthias; Scholz, Uwe; Schreiber, Falk |
| Year of publication: | 2009 |
| Conference: | 6th International Workshop, DILS 2009, Jul 20, 2009 - Jul 22, 2009, Manchester, UK |
| Published in: | Data Integration in the Life Sciences : 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009; proceedings / Paton, Norman W. et al. (ed.). - Berlin : Springer, 2009. - (Lecture Notes in Computer Science ; 5647). - pp. 196-203. - ISSN 0302-9743. - eISSN 1611-3349. - ISBN 978-3-642-02878-6 |
| DOI (citable link): | https://dx.doi.org/10.1007/978-3-642-02879-3_16 |
| Summary: |
To advance the comprehension of complex biological processes occurring in crop plants (e.g. for improvement of growth or yield) it is of high interest to reconstruct and analyse detailed metabolic models. Therefore, we established a pipeline combining software tools for (1) storage of metabolic pathway data and reconstruction of crop plant metabolic models, (2) simulation and analysis of stoichiometric and kinetic models and (3) visualisation of data generated with these models. The applicability of the approach is demonstrated by a case study of cereal seed metabolism.
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| Subject (DDC): | 004 Computer Science |
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WEISE, Stephan, Christian COLMSEE, Eva GRAFAHREND-BELAU, Björn JUNKER, Christian KLUKAS, Matthias LANGE, Uwe SCHOLZ, Falk SCHREIBER, 2009. An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism. 6th International Workshop, DILS 2009. Manchester, UK, Jul 20, 2009 - Jul 22, 2009. In: PATON, Norman W., ed. and others. Data Integration in the Life Sciences : 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009; proceedings. Berlin:Springer, pp. 196-203. ISSN 0302-9743. eISSN 1611-3349. ISBN 978-3-642-02878-6. Available under: doi: 10.1007/978-3-642-02879-3_16
@inproceedings{Weise2009Integ-40353, title={An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism}, year={2009}, doi={10.1007/978-3-642-02879-3_16}, number={5647}, isbn={978-3-642-02878-6}, issn={0302-9743}, address={Berlin}, publisher={Springer}, series={Lecture Notes in Computer Science}, booktitle={Data Integration in the Life Sciences : 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009; proceedings}, pages={196--203}, editor={Paton, Norman W.}, author={Weise, Stephan and Colmsee, Christian and Grafahrend-Belau, Eva and Junker, Björn and Klukas, Christian and Lange, Matthias and Scholz, Uwe and Schreiber, Falk} }
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