IDPredictor : predict database links in biomedical database

Cite This

Files in this item

Checksum: MD5:2dd08b315603f65308925204471ec2c5

MEHLHORN, Hendrik, Matthias LANGE, Uwe SCHOLZ, Falk SCHREIBER, 2012. IDPredictor : predict database links in biomedical database. International Symposium on Integrative Bioinformatics. Hangzhou, China, Apr 2, 2012 - Apr 4, 2012. In: Journal of Integrative Bioinformatics - JIB ; 9,2, 190. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2012-190

@inproceedings{Mehlhorn2012-06-26IDPre-38616, title={IDPredictor : predict database links in biomedical database}, year={2012}, doi={10.2390/biecoll-jib-2012-190}, booktitle={Journal of Integrative Bioinformatics - JIB ; 9,2}, author={Mehlhorn, Hendrik and Lange, Matthias and Scholz, Uwe and Schreiber, Falk}, note={Article Number: 190} }

<rdf:RDF xmlns:dcterms="" xmlns:dc="" xmlns:rdf="" xmlns:bibo="" xmlns:dspace="" xmlns:foaf="" xmlns:void="" xmlns:xsd="" > <rdf:Description rdf:about=""> <dc:language>eng</dc:language> <dc:creator>Mehlhorn, Hendrik</dc:creator> <foaf:homepage rdf:resource="http://localhost:8080/jspui"/> <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/> <bibo:uri rdf:resource=""/> <dc:contributor>Lange, Matthias</dc:contributor> <dcterms:rights rdf:resource=""/> <dcterms:title>IDPredictor : predict database links in biomedical database</dcterms:title> <dc:contributor>Mehlhorn, Hendrik</dc:contributor> <dspace:hasBitstream rdf:resource=""/> <dcterms:isPartOf rdf:resource=""/> <dc:rights>terms-of-use</dc:rights> <dcterms:hasPart rdf:resource=""/> <dcterms:abstract xml:lang="eng">Knowledge found in biomedical databases, in particular in Web information systems, is a major bioinformatics resource. In general, this biological knowledge is worldwide represented in a network of databases. These data is spread among thousands of databases, which overlap in content, but differ substantially with respect to content detail, interface, formats and data structure. To support a functional annotation of lab data, such as protein sequences, metabolites or DNA sequences as well as a semi-automated data exploration in information retrieval environments, an integrated view to databases is essential. Search engines have the potential of assisting in data retrieval from these structured sources, but fall short of providing a comprehensive knowledge except out of the interlinked databases. A prerequisite of supporting the concept of an integrated data view is to acquire insights into cross-references among database entities. This issue is being hampered by the fact, that only a fraction of all possible cross-references are explicitely tagged in the particular biomedical informations systems. In this work, we investigate to what extend an automated construction of an integrated data network is possible. We propose a method that predicts and extracts cross-references from multiple life science databases and possible referenced data targets. We study the retrieval quality of our method and report on first, promising results. The method is implemented as the tool IDPredictor, which is published under the DOI 10.5447/IPK/2012/4 and is freely available using the URL:</dcterms:abstract> <dspace:isPartOfCollection rdf:resource=""/> <dc:date rdf:datatype="">2017-04-26T09:13:55Z</dc:date> <dcterms:available rdf:datatype="">2017-04-26T09:13:55Z</dcterms:available> <dc:contributor>Schreiber, Falk</dc:contributor> <dcterms:issued>2012-06-26</dcterms:issued> <dc:creator>Schreiber, Falk</dc:creator> <dc:creator>Scholz, Uwe</dc:creator> <dc:creator>Lange, Matthias</dc:creator> <dc:contributor>Scholz, Uwe</dc:contributor> </rdf:Description> </rdf:RDF>

Downloads since Apr 26, 2017 (Information about access statistics)

Mehlhorn_0-396389.pdf 226

This item appears in the following Collection(s)

Search KOPS


My Account