KymoRod : a method for automated kinematic analysis of rod-shaped plant organs


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BASTIEN, Renaud, David LEGLAND, Marjolaine MARTIN, Lucien FREGOSI, Alexis PEAUCELLE, Stéphane DOUADY, Bruno MOULIA, Herman HÖFTE, 2016. KymoRod : a method for automated kinematic analysis of rod-shaped plant organs. In: The Plant Journal. 88(3), pp. 468-475. ISSN 0960-7412. eISSN 1365-313X. Available under: doi: 10.1111/tpj.13255

@article{Bastien2016KymoR-36782, title={KymoRod : a method for automated kinematic analysis of rod-shaped plant organs}, year={2016}, doi={10.1111/tpj.13255}, number={3}, volume={88}, issn={0960-7412}, journal={The Plant Journal}, pages={468--475}, author={Bastien, Renaud and Legland, David and Martin, Marjolaine and Fregosi, Lucien and Peaucelle, Alexis and Douady, Stéphane and Moulia, Bruno and Höfte, Herman} }

<rdf:RDF xmlns:dcterms="" xmlns:dc="" xmlns:rdf="" xmlns:bibo="" xmlns:dspace="" xmlns:foaf="" xmlns:void="" xmlns:xsd="" > <rdf:Description rdf:about=""> <dc:creator>Douady, Stéphane</dc:creator> <dcterms:issued>2016</dcterms:issued> <dc:contributor>Moulia, Bruno</dc:contributor> <dc:language>eng</dc:language> <dc:contributor>Fregosi, Lucien</dc:contributor> <dc:contributor>Martin, Marjolaine</dc:contributor> <dc:contributor>Bastien, Renaud</dc:contributor> <dc:contributor>Legland, David</dc:contributor> <bibo:uri rdf:resource=""/> <dc:contributor>Douady, Stéphane</dc:contributor> <dc:creator>Moulia, Bruno</dc:creator> <dc:contributor>Peaucelle, Alexis</dc:contributor> <dc:creator>Bastien, Renaud</dc:creator> <dcterms:isPartOf rdf:resource=""/> <foaf:homepage rdf:resource="http://localhost:8080/jspui"/> <dc:creator>Martin, Marjolaine</dc:creator> <dc:creator>Höfte, Herman</dc:creator> <dc:date rdf:datatype="">2017-01-18T09:55:10Z</dc:date> <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/> <dc:contributor>Höfte, Herman</dc:contributor> <dc:creator>Fregosi, Lucien</dc:creator> <dc:creator>Legland, David</dc:creator> <dcterms:title>KymoRod : a method for automated kinematic analysis of rod-shaped plant organs</dcterms:title> <dspace:isPartOfCollection rdf:resource=""/> <dc:creator>Peaucelle, Alexis</dc:creator> <dcterms:available rdf:datatype="">2017-01-18T09:55:10Z</dcterms:available> <dcterms:abstract xml:lang="eng">A major challenge in plant systems biology is the development of robust, predictive multiscale models for organ growth. In this context it is important to bridge the gap between the, rather well-documented molecular scale and the organ scale by providing quantitative methods to study within-organ growth patterns. Here, we describe a simple method for the analysis of the evolution of growth patterns within rod-shaped organs that does not require adding markers at the organ surface. The method allows for the simultaneous analysis of root and hypocotyl growth, provides spatio-temporal information on curvature, growth anisotropy and relative elemental growth rate and can cope with complex organ movements. We demonstrate the performance of the method by documenting previously unsuspected complex growth patterns within the growing hypocotyl of the model species Arabidopsis thaliana during normal growth, after treatment with a growth-inhibiting drug or in a mechano-sensing mutant. The method is freely available as an intuitive and user-friendly Matlab application called KymoRod.</dcterms:abstract> </rdf:Description> </rdf:RDF>

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