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Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios

Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios

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KOVANCI, Gökhan, Mehmood GHAFFAR, Björn SOMMER, 2016. Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios. In: Journal of Integrative Bioinformatics. 13(5), 298. eISSN 1613-4516

@article{Kovanci2016Web-b-36644, title={Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios}, year={2016}, doi={10.2390/biecoll-jib-2016-298}, number={5}, volume={13}, journal={Journal of Integrative Bioinformatics}, author={Kovanci, Gökhan and Ghaffar, Mehmood and Sommer, Björn}, note={Article Number: 298} }

<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bibo="http://purl.org/ontology/bibo/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > <rdf:Description rdf:about="https://kops.uni-konstanz.de/rdf/resource/123456789/36644"> <dcterms:title>Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios</dcterms:title> <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-01-13T12:11:23Z</dcterms:available> <dc:creator>Sommer, Björn</dc:creator> <dc:contributor>Sommer, Björn</dc:contributor> <dc:contributor>Ghaffar, Mehmood</dc:contributor> <dc:contributor>Kovanci, Gökhan</dc:contributor> <dcterms:issued>2016</dcterms:issued> <dc:language>eng</dc:language> <dc:creator>Kovanci, Gökhan</dc:creator> <dcterms:abstract xml:lang="eng">The CELLmicrocosmos 4.2 PathwayIntegration (CmPI) is a tool which provides hybrid-dimensional visualization and analysis of intracellular protein and gene localizations in the context of a virtual 3D environment. This tool is developed based on Java/Java3D/JOGL and provides a standalone application compatible to all relevant operating systems. However, it requires Java and the local installation of the software. Here we present the prototype of an alternative web-based visualization approach, using Three.js and D3.js. In this way it is possible to visualize and explore CmPI-generated localization scenarios including networks mapped to 3D cell components by just providing a URL to a collaboration partner. This publication describes the integration of the different technologies – Three.js, D3.js and PHP – as well as an application case: a localization scenario of the citrate cycle. The CmPI web viewer is available at: http://CmPIweb.CELLmicrocosmos.org.</dcterms:abstract> <dc:creator>Ghaffar, Mehmood</dc:creator> <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/36644"/> <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-01-13T12:11:23Z</dc:date> </rdf:Description> </rdf:RDF>

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