Sustainable software development in science – insights from 20 years of Vanted

Kurzanzeige
dc.contributor.authorSchreiber, Falk
dc.contributor.authorCzauderna, Tobias
dc.contributor.authorGarkov, Dimitar
dc.contributor.authorGröne, Niklas
dc.contributor.authorKlein, Karsten
dc.contributor.authorLange, Matthias
dc.contributor.authorScholz, Uwe
dc.contributor.authorSommer, Björn
dc.date.accessioned2025-07-07T08:06:51Z
dc.date.available2025-07-07T08:06:51Z
dc.date.issued2025-08-07
dc.description.abstractSustainable software development requires the software to remain accessible and maintainable over long time. This is particularly challenging in a scientific context. For example, fewer than one third of tools and platforms for biological network representation, analysis, and visualisation have been available and supported over a period of 15 years. One of those tools is Vanted, which has been developed and actively supported over the past 20 years. In this work, we discuss sustainable software development in science and investigate which software tools for biological network representation, analysis, and visualisation are maintained over a period of at least 15 years. With Vanted as a case study, we highlight five key insights that we consider crucial for sustainable, long-term software development and software maintenance in science.
dc.description.versionpublisheddeu
dc.identifier.doi10.1515/jib-2025-0007
dc.identifier.ppn1938569083
dc.identifier.urihttps://kops.uni-konstanz.de/handle/123456789/73834
dc.language.isoeng
dc.rightsAttribution 4.0 International
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjecttools
dc.subjectsustainable software development
dc.subjectnetwork analysis and visualisation
dc.subject.ddc004
dc.titleSustainable software development in science – insights from 20 years of Vantedeng
dc.typeJOURNAL_ARTICLE
dspace.entity.typePublication
kops.citation.bibtex
@article{Schreiber2025-08-07Susta-73834,
  title={Sustainable software development in science – insights from 20 years of Vanted},
  year={2025},
  doi={10.1515/jib-2025-0007},
  number={1},
  volume={22},
  journal={Journal of Integrative Bioinformatics},
  author={Schreiber, Falk and Czauderna, Tobias and Garkov, Dimitar and Gröne, Niklas and Klein, Karsten and Lange, Matthias and Scholz, Uwe and Sommer, Björn},
  note={Article Number: 20250007}
}
kops.citation.iso690SCHREIBER, Falk, Tobias CZAUDERNA, Dimitar GARKOV, Niklas GRÖNE, Karsten KLEIN, Matthias LANGE, Uwe SCHOLZ, Björn SOMMER, 2025. Sustainable software development in science – insights from 20 years of Vanted. In: Journal of Integrative Bioinformatics. Walter de Gruyter GmbH. 2025, 22(1), 20250007. eISSN 1613-4516. Verfügbar unter: doi: 10.1515/jib-2025-0007deu
kops.citation.iso690SCHREIBER, Falk, Tobias CZAUDERNA, Dimitar GARKOV, Niklas GRÖNE, Karsten KLEIN, Matthias LANGE, Uwe SCHOLZ, Björn SOMMER, 2025. Sustainable software development in science – insights from 20 years of Vanted. In: Journal of Integrative Bioinformatics. Walter de Gruyter GmbH. 2025, 22(1), 20250007. eISSN 1613-4516. Available under: doi: 10.1515/jib-2025-0007eng
kops.citation.rdf
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/73834">
    <dc:contributor>Lange, Matthias</dc:contributor>
    <dc:contributor>Sommer, Björn</dc:contributor>
    <dc:creator>Klein, Karsten</dc:creator>
    <dc:language>eng</dc:language>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/73834/1/Schreiber_2-23jmmxbsq00d3.pdf"/>
    <dc:creator>Gröne, Niklas</dc:creator>
    <dc:contributor>Garkov, Dimitar</dc:contributor>
    <dc:contributor>Schreiber, Falk</dc:contributor>
    <dc:creator>Garkov, Dimitar</dc:creator>
    <dcterms:abstract>Sustainable software development requires the software to remain accessible and maintainable over long time. This is particularly challenging in a scientific context. For example, fewer than one third of tools and platforms for biological network representation, analysis, and visualisation have been available and supported over a period of 15 years. One of those tools is Vanted, which has been developed and actively supported over the past 20 years. In this work, we discuss sustainable software development in science and investigate which software tools for biological network representation, analysis, and visualisation are maintained over a period of at least 15 years. With Vanted as a case study, we highlight five key insights that we consider crucial for sustainable, long-term software development and software maintenance in science.</dcterms:abstract>
    <dcterms:issued>2025-08-07</dcterms:issued>
    <dcterms:rights rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
    <dcterms:title>Sustainable software development in science – insights from 20 years of Vanted</dcterms:title>
    <dc:creator>Czauderna, Tobias</dc:creator>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2025-07-07T08:06:51Z</dcterms:available>
    <dc:rights>Attribution 4.0 International</dc:rights>
    <dc:contributor>Scholz, Uwe</dc:contributor>
    <dc:creator>Lange, Matthias</dc:creator>
    <dc:contributor>Klein, Karsten</dc:contributor>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2025-07-07T08:06:51Z</dc:date>
    <dc:creator>Sommer, Björn</dc:creator>
    <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/73834/1/Schreiber_2-23jmmxbsq00d3.pdf"/>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/73834"/>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:contributor>Gröne, Niklas</dc:contributor>
    <dc:creator>Schreiber, Falk</dc:creator>
    <dc:contributor>Czauderna, Tobias</dc:contributor>
    <dc:creator>Scholz, Uwe</dc:creator>
  </rdf:Description>
</rdf:RDF>
kops.description.funding{"second":"251654672-TRR 161","first":"dfg"}
kops.description.funding{"second":"EXC 2117–422037984","first":"dfg"}
kops.description.openAccessopenaccessgold
kops.flag.isPeerReviewedtrue
kops.flag.knbibliographytrue
kops.identifier.nbnurn:nbn:de:bsz:352-2-23jmmxbsq00d3
kops.sourcefieldJournal of Integrative Bioinformatics. Walter de Gruyter GmbH. 2025, <b>22</b>(1), 20250007. eISSN 1613-4516. Verfügbar unter: doi: 10.1515/jib-2025-0007deu
kops.sourcefield.plainJournal of Integrative Bioinformatics. Walter de Gruyter GmbH. 2025, 22(1), 20250007. eISSN 1613-4516. Verfügbar unter: doi: 10.1515/jib-2025-0007deu
kops.sourcefield.plainJournal of Integrative Bioinformatics. Walter de Gruyter GmbH. 2025, 22(1), 20250007. eISSN 1613-4516. Available under: doi: 10.1515/jib-2025-0007eng
relation.isAuthorOfPublication4a62a6c5-bf37-4efa-a633-4229ff88ed2e
relation.isAuthorOfPublication9ff438b1-a065-4ba9-93fb-ec0aa63adbfc
relation.isAuthorOfPublicationb1bb322a-c300-4a78-a83a-48ca93fdef0e
relation.isAuthorOfPublication783856d3-db6f-4abb-8969-9efd393896c7
relation.isAuthorOfPublication910f0ffa-4eb3-4692-9b36-e65b9f891283
relation.isAuthorOfPublication.latestForDiscovery4a62a6c5-bf37-4efa-a633-4229ff88ed2e
source.bibliographicInfo.articleNumber20250007
source.bibliographicInfo.issue1
source.bibliographicInfo.volume22
source.identifier.eissn1613-4516
source.periodicalTitleJournal of Integrative Bioinformatics
source.publisherWalter de Gruyter GmbH
temp.description.funding{"first":"Deutsche Forschungsgemeinschaft","second":"251654672-TRR 161"}

Dateien

Originalbündel

Gerade angezeigt 1 - 1 von 1
Vorschaubild nicht verfügbar
Name:
Schreiber_2-23jmmxbsq00d3.pdf
Größe:
6.65 MB
Format:
Adobe Portable Document Format
Beschreibung:
Artikel
Schreiber_2-23jmmxbsq00d3.pdf
Schreiber_2-23jmmxbsq00d3.pdfGröße: 6.65 MBDownloads: 12

Sammlungen

Informatik und Informationswissenschaft: Publikationen