Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios
| dc.contributor.author | Kovanci, Gökhan | |
| dc.contributor.author | Ghaffar, Mehmood | |
| dc.contributor.author | Sommer, Björn | |
| dc.date.accessioned | 2017-01-13T12:11:23Z | |
| dc.date.available | 2017-01-13T12:11:23Z | |
| dc.date.issued | 2016 | eng |
| dc.description.abstract | The CELLmicrocosmos 4.2 PathwayIntegration (CmPI) is a tool which provides hybrid-dimensional visualization and analysis of intracellular protein and gene localizations in the context of a virtual 3D environment. This tool is developed based on Java/Java3D/JOGL and provides a standalone application compatible to all relevant operating systems. However, it requires Java and the local installation of the software. Here we present the prototype of an alternative web-based visualization approach, using Three.js and D3.js. In this way it is possible to visualize and explore CmPI-generated localization scenarios including networks mapped to 3D cell components by just providing a URL to a collaboration partner. This publication describes the integration of the different technologies – Three.js, D3.js and PHP – as well as an application case: a localization scenario of the citrate cycle. The CmPI web viewer is available at: http://CmPIweb.CELLmicrocosmos.org. | eng |
| dc.description.version | published | eng |
| dc.identifier.doi | 10.2390/biecoll-jib-2016-298 | eng |
| dc.identifier.uri | https://kops.uni-konstanz.de/handle/123456789/36644 | |
| dc.language.iso | eng | eng |
| dc.subject.ddc | 004 | eng |
| dc.title | Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios | eng |
| dc.type | JOURNAL_ARTICLE | eng |
| dspace.entity.type | Publication | |
| kops.citation.bibtex | @article{Kovanci2016Webba-36644,
year={2016},
doi={10.2390/biecoll-jib-2016-298},
title={Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios},
number={5},
volume={13},
journal={Journal of Integrative Bioinformatics},
author={Kovanci, Gökhan and Ghaffar, Mehmood and Sommer, Björn},
note={Article Number: 298}
} | |
| kops.citation.iso690 | KOVANCI, Gökhan, Mehmood GHAFFAR, Björn SOMMER, 2016. Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios. In: Journal of Integrative Bioinformatics. 2016, 13(5), 298. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2016-298 | deu |
| kops.citation.iso690 | KOVANCI, Gökhan, Mehmood GHAFFAR, Björn SOMMER, 2016. Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios. In: Journal of Integrative Bioinformatics. 2016, 13(5), 298. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2016-298 | eng |
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| kops.sourcefield | Journal of Integrative Bioinformatics. 2016, <b>13</b>(5), 298. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2016-298 | deu |
| kops.sourcefield.plain | Journal of Integrative Bioinformatics. 2016, 13(5), 298. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2016-298 | deu |
| kops.sourcefield.plain | Journal of Integrative Bioinformatics. 2016, 13(5), 298. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2016-298 | eng |
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