Biological imaging software tools

dc.contributor.authorEliceiri, Kevin W.deu
dc.contributor.authorBerthold, Michael R.
dc.contributor.authorGoldberg, Ilya G.deu
dc.contributor.authorIbáñez, Luisdeu
dc.contributor.authorManjunath, Bangalore S.deu
dc.contributor.authorMartone, Maryann E.deu
dc.contributor.authorMurphy, Robert F.deu
dc.contributor.authorPeng, Hanchuandeu
dc.contributor.authorPlant, Anne L.deu
dc.contributor.authorRoysam, Badrinathdeu
dc.contributor.authorStuurman, Nicodeu
dc.contributor.authorSwedlow, Jason R.deu
dc.contributor.authorTomancak, Paveldeu
dc.contributor.authorCarpenter, Anne E.deu
dc.date.accessioned2013-06-06T10:14:01Zdeu
dc.date.available2013-06-06T10:14:01Zdeu
dc.date.issued2012-07
dc.description.abstractFew technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the acquisition, management, analysis and visualization of the imaging data. We review each computational step that biologists encounter when dealing with digital images, the inherent challenges and the overall status of available software for bioimage informatics, focusing on open-source options.eng
dc.description.versionpublished
dc.identifier.citationNature Methods ; 9 (2012), 7. - S. 697-710deu
dc.identifier.doi10.1038/nmeth.2084deu
dc.identifier.pmid22743775
dc.identifier.urihttp://kops.uni-konstanz.de/handle/123456789/22785
dc.language.isoengdeu
dc.legacy.dateIssued2013-06-06deu
dc.rightsterms-of-usedeu
dc.rights.urihttps://rightsstatements.org/page/InC/1.0/deu
dc.subjectBioinformaticsdeu
dc.subjectimagingdeu
dc.subjectmicroscopydeu
dc.subjectsoftwaredeu
dc.subject.ddc004deu
dc.titleBiological imaging software toolseng
dc.typeJOURNAL_ARTICLEdeu
dspace.entity.typePublication
kops.citation.bibtex
@article{Eliceiri2012-07Biolo-22785,
  year={2012},
  doi={10.1038/nmeth.2084},
  title={Biological imaging software tools},
  number={7},
  volume={9},
  issn={1548-7091},
  journal={Nature Methods},
  pages={697--710},
  author={Eliceiri, Kevin W. and Berthold, Michael R. and Goldberg, Ilya G. and Ibáñez, Luis and Manjunath, Bangalore S. and Martone, Maryann E. and Murphy, Robert F. and Peng, Hanchuan and Plant, Anne L. and Roysam, Badrinath and Stuurman, Nico and Swedlow, Jason R. and Tomancak, Pavel and Carpenter, Anne E.}
}
kops.citation.iso690ELICEIRI, Kevin W., Michael R. BERTHOLD, Ilya G. GOLDBERG, Luis IBÁÑEZ, Bangalore S. MANJUNATH, Maryann E. MARTONE, Robert F. MURPHY, Hanchuan PENG, Anne L. PLANT, Badrinath ROYSAM, Nico STUURMAN, Jason R. SWEDLOW, Pavel TOMANCAK, Anne E. CARPENTER, 2012. Biological imaging software tools. In: Nature Methods. 2012, 9(7), pp. 697-710. ISSN 1548-7091. eISSN 1548-7105. Available under: doi: 10.1038/nmeth.2084deu
kops.citation.iso690ELICEIRI, Kevin W., Michael R. BERTHOLD, Ilya G. GOLDBERG, Luis IBÁÑEZ, Bangalore S. MANJUNATH, Maryann E. MARTONE, Robert F. MURPHY, Hanchuan PENG, Anne L. PLANT, Badrinath ROYSAM, Nico STUURMAN, Jason R. SWEDLOW, Pavel TOMANCAK, Anne E. CARPENTER, 2012. Biological imaging software tools. In: Nature Methods. 2012, 9(7), pp. 697-710. ISSN 1548-7091. eISSN 1548-7105. Available under: doi: 10.1038/nmeth.2084eng
kops.citation.rdf
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/22785">
    <dc:creator>Goldberg, Ilya G.</dc:creator>
    <dc:contributor>Swedlow, Jason R.</dc:contributor>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2013-06-06T10:14:01Z</dcterms:available>
    <dc:contributor>Carpenter, Anne E.</dc:contributor>
    <dc:contributor>Ibáñez, Luis</dc:contributor>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:creator>Eliceiri, Kevin W.</dc:creator>
    <dc:rights>terms-of-use</dc:rights>
    <dc:contributor>Eliceiri, Kevin W.</dc:contributor>
    <dc:creator>Roysam, Badrinath</dc:creator>
    <dc:contributor>Roysam, Badrinath</dc:contributor>
    <dc:creator>Murphy, Robert F.</dc:creator>
    <dc:contributor>Murphy, Robert F.</dc:contributor>
    <dcterms:bibliographicCitation>Nature Methods ; 9 (2012), 7. - S. 697-710</dcterms:bibliographicCitation>
    <dc:contributor>Plant, Anne L.</dc:contributor>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:contributor>Goldberg, Ilya G.</dc:contributor>
    <dcterms:rights rdf:resource="https://rightsstatements.org/page/InC/1.0/"/>
    <dc:contributor>Tomancak, Pavel</dc:contributor>
    <dc:creator>Swedlow, Jason R.</dc:creator>
    <dc:contributor>Martone, Maryann E.</dc:contributor>
    <dcterms:abstract xml:lang="eng">Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the acquisition, management, analysis and visualization of the imaging data. We review each computational step that biologists encounter when dealing with digital images, the inherent challenges and the overall status of available software for bioimage informatics, focusing on open-source options.</dcterms:abstract>
    <dc:creator>Plant, Anne L.</dc:creator>
    <dc:creator>Berthold, Michael R.</dc:creator>
    <dc:creator>Carpenter, Anne E.</dc:creator>
    <dc:language>eng</dc:language>
    <dc:creator>Manjunath, Bangalore S.</dc:creator>
    <dc:creator>Stuurman, Nico</dc:creator>
    <bibo:uri rdf:resource="http://kops.uni-konstanz.de/handle/123456789/22785"/>
    <dc:contributor>Stuurman, Nico</dc:contributor>
    <dc:creator>Martone, Maryann E.</dc:creator>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dc:creator>Tomancak, Pavel</dc:creator>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2013-06-06T10:14:01Z</dc:date>
    <dc:contributor>Berthold, Michael R.</dc:contributor>
    <dc:creator>Ibáñez, Luis</dc:creator>
    <dcterms:title>Biological imaging software tools</dcterms:title>
    <dc:creator>Peng, Hanchuan</dc:creator>
    <dc:contributor>Manjunath, Bangalore S.</dc:contributor>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dc:contributor>Peng, Hanchuan</dc:contributor>
    <dcterms:issued>2012-07</dcterms:issued>
  </rdf:Description>
</rdf:RDF>
kops.flag.knbibliographytrue
kops.identifier.nbnurn:nbn:de:bsz:352-227859deu
kops.sourcefieldNature Methods. 2012, <b>9</b>(7), pp. 697-710. ISSN 1548-7091. eISSN 1548-7105. Available under: doi: 10.1038/nmeth.2084deu
kops.sourcefield.plainNature Methods. 2012, 9(7), pp. 697-710. ISSN 1548-7091. eISSN 1548-7105. Available under: doi: 10.1038/nmeth.2084deu
kops.sourcefield.plainNature Methods. 2012, 9(7), pp. 697-710. ISSN 1548-7091. eISSN 1548-7105. Available under: doi: 10.1038/nmeth.2084eng
kops.submitter.emailoleg.kozlov@uni-konstanz.dedeu
relation.isAuthorOfPublication56ea9ab6-14a4-493e-8ef1-3c064e0c50a1
relation.isAuthorOfPublication.latestForDiscovery56ea9ab6-14a4-493e-8ef1-3c064e0c50a1
source.bibliographicInfo.fromPage697
source.bibliographicInfo.issue7
source.bibliographicInfo.toPage710
source.bibliographicInfo.volume9
source.identifier.eissn1548-7105
source.identifier.issn1548-7091
source.periodicalTitleNature Methods

Dateien

Lizenzbündel

Gerade angezeigt 1 - 1 von 1
Vorschaubild nicht verfügbar
Name:
license.txt
Größe:
1.92 KB
Format:
Plain Text
Beschreibung:
license.txt
license.txtGröße: 1.92 KBDownloads: 0