Biological imaging software tools

Eliceiri, Kevin W.; Berthold, Michael R.; Goldberg, Ilya G.; Ibáñez, Luis; Manjunath, Bangalore S.; Martone, Maryann E.; Murphy, Robert F.; Peng, Hanchuan; Plant, Anne L.; Roysam, Badrinath; Stuurman, Nico; Swedlow, Jason R.; Tomancak, Pavel; Carpenter, Anne E.

Biological imaging software tools

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Datum

2012

Autor:innen

Eliceiri, Kevin W.

Berthold, Michael R.

Goldberg, Ilya G.

Ibáñez, Luis

Manjunath, Bangalore S.

Martone, Maryann E.

Murphy, Robert F.

Peng, Hanchuan

Plant, Anne L.

Roysam, Badrinath

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Publikationstyp

Zeitschriftenartikel

Publikationsstatus

Published

Erschienen in

Nature Methods. 2012, 9(7), pp. 697-710. ISSN 1548-7091. eISSN 1548-7105. Available under: doi: 10.1038/nmeth.2084

Zusammenfassung

Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the acquisition, management, analysis and visualization of the imaging data. We review each computational step that biologists encounter when dealing with digital images, the inherent challenges and the overall status of available software for bioimage informatics, focusing on open-source options.

Fachgebiet (DDC)

004 Informatik

Schlagwörter

Bioinformatics, imaging, microscopy, software

Zitieren

ISO 690

ELICEIRI, Kevin W., Michael R. BERTHOLD, Ilya G. GOLDBERG, Luis IBÁÑEZ, Bangalore S. MANJUNATH, Maryann E. MARTONE, Robert F. MURPHY, Hanchuan PENG, Anne L. PLANT, Badrinath ROYSAM, Nico STUURMAN, Jason R. SWEDLOW, Pavel TOMANCAK, Anne E. CARPENTER, 2012. Biological imaging software tools. In: Nature Methods. 2012, 9(7), pp. 697-710. ISSN 1548-7091. eISSN 1548-7105. Available under: doi: 10.1038/nmeth.2084

BibTex

@article{Eliceiri2012-07Biolo-22785,
  year={2012},
  doi={10.1038/nmeth.2084},
  title={Biological imaging software tools},
  number={7},
  volume={9},
  issn={1548-7091},
  journal={Nature Methods},
  pages={697--710},
  author={Eliceiri, Kevin W. and Berthold, Michael R. and Goldberg, Ilya G. and Ibáñez, Luis and Manjunath, Bangalore S. and Martone, Maryann E. and Murphy, Robert F. and Peng, Hanchuan and Plant, Anne L. and Roysam, Badrinath and Stuurman, Nico and Swedlow, Jason R. and Tomancak, Pavel and Carpenter, Anne E.}
}

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