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An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism

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2009

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Weise, Stephan
Colmsee, Christian
Grafahrend-Belau, Eva
Junker, Björn
Klukas, Christian
Lange, Matthias
Scholz, Uwe

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https://doi.org/10.1007/978-3-642-02879-3_16
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PATON, Norman W., ed. and others. Data Integration in the Life Sciences : 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009; proceedings. Berlin: Springer, 2009, pp. 196-203. Lecture Notes in Computer Science. 5647. ISSN 0302-9743. eISSN 1611-3349. ISBN 978-3-642-02878-6. Available under: doi: 10.1007/978-3-642-02879-3_16

Zusammenfassung

To advance the comprehension of complex biological processes occurring in crop plants (e.g. for improvement of growth or yield) it is of high interest to reconstruct and analyse detailed metabolic models. Therefore, we established a pipeline combining software tools for (1) storage of metabolic pathway data and reconstruction of crop plant metabolic models, (2) simulation and analysis of stoichiometric and kinetic models and (3) visualisation of data generated with these models. The applicability of the approach is demonstrated by a case study of cereal seed metabolism.

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6th International Workshop, DILS 2009, 20. Juli 2009 - 22. Juli 2009, Manchester, UK
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ISO 690WEISE, Stephan, Christian COLMSEE, Eva GRAFAHREND-BELAU, Björn JUNKER, Christian KLUKAS, Matthias LANGE, Uwe SCHOLZ, Falk SCHREIBER, 2009. An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism. 6th International Workshop, DILS 2009. Manchester, UK, 20. Juli 2009 - 22. Juli 2009. In: PATON, Norman W., ed. and others. Data Integration in the Life Sciences : 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009; proceedings. Berlin: Springer, 2009, pp. 196-203. Lecture Notes in Computer Science. 5647. ISSN 0302-9743. eISSN 1611-3349. ISBN 978-3-642-02878-6. Available under: doi: 10.1007/978-3-642-02879-3_16
BibTex
@inproceedings{Weise2009Integ-40353,
  year={2009},
  doi={10.1007/978-3-642-02879-3_16},
  title={An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism},
  number={5647},
  isbn={978-3-642-02878-6},
  issn={0302-9743},
  publisher={Springer},
  address={Berlin},
  series={Lecture Notes in Computer Science},
  booktitle={Data Integration in the Life Sciences : 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009; proceedings},
  pages={196--203},
  editor={Paton, Norman W.},
  author={Weise, Stephan and Colmsee, Christian and Grafahrend-Belau, Eva and Junker, Björn and Klukas, Christian and Lange, Matthias and Scholz, Uwe and Schreiber, Falk}
}
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