Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models

Kurzanzeige
dc.contributor.authorKeegan, Ronan M.
dc.contributor.authorBibby, Jaclyn
dc.contributor.authorThomas, Jens
dc.contributor.authorXu, Dong
dc.contributor.authorZhang, Yang
dc.contributor.authorMayans, Olga
dc.contributor.authorWinn, Martyn D.
dc.contributor.authorRigden, Daniel J.
dc.date.accessioned2016-08-05T13:43:00Z
dc.date.available2016-08-05T13:43:00Z
dc.date.issued2015-02-01eng
dc.description.abstractAMPLE clusters and truncates ab initio protein structure predictions, producing search models for molecular replacement. Here, an interesting degree of complementarity is shown between targets solved using the different ab initio modelling programs QUARK and ROSETTA. Search models derived from either program collectively solve almost all of the all-helical targets in the test set. Initial solutions produced by Phaser after only 5 min perform surprisingly well, improving the prospects for in situ structure solution by AMPLE during synchrotron visits. Taken together, the results show the potential for AMPLE to run more quickly and successfully solve more targets than previously suspected.eng
dc.description.versionpublishedeng
dc.identifier.doi10.1107/S1399004714025784eng
dc.identifier.pmid25664744eng
dc.identifier.ppn475754832
dc.identifier.urihttps://kops.uni-konstanz.de/handle/123456789/34959
dc.language.isoengeng
dc.rightsterms-of-use
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dc.subject.ddc570eng
dc.titleExploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein modelseng
dc.typeJOURNAL_ARTICLEeng
dspace.entity.typePublication
kops.citation.bibtex
@article{Keegan2015-02-01Explo-34959,
  year={2015},
  doi={10.1107/S1399004714025784},
  title={Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models},
  number={2},
  volume={71},
  issn={0907-4449},
  journal={Acta Crystallographica Section D Biological Crystallography},
  pages={338--343},
  author={Keegan, Ronan M. and Bibby, Jaclyn and Thomas, Jens and Xu, Dong and Zhang, Yang and Mayans, Olga and Winn, Martyn D. and Rigden, Daniel J.}
}
kops.citation.iso690KEEGAN, Ronan M., Jaclyn BIBBY, Jens THOMAS, Dong XU, Yang ZHANG, Olga MAYANS, Martyn D. WINN, Daniel J. RIGDEN, 2015. Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models. In: Acta Crystallographica Section D Biological Crystallography. 2015, 71(2), pp. 338-343. ISSN 0907-4449. eISSN 1399-0047. Available under: doi: 10.1107/S1399004714025784deu
kops.citation.iso690KEEGAN, Ronan M., Jaclyn BIBBY, Jens THOMAS, Dong XU, Yang ZHANG, Olga MAYANS, Martyn D. WINN, Daniel J. RIGDEN, 2015. Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models. In: Acta Crystallographica Section D Biological Crystallography. 2015, 71(2), pp. 338-343. ISSN 0907-4449. eISSN 1399-0047. Available under: doi: 10.1107/S1399004714025784eng
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