Draft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01T

dc.contributor.authorJunghare, Madan
dc.contributor.authorPatil, Yogita
dc.contributor.authorSchink, Bernhard
dc.date.accessioned2015-11-26T12:37:19Z
dc.date.available2015-11-26T12:37:19Z
dc.date.issued2015eng
dc.description.abstractAzoarcus sp. strain PA01T belongs to the genus Azoarcus, of the family Rhodocyclaceae within the class Betaproteobacteria. It is a facultatively anaerobic, mesophilic, non-motile, Gram-stain negative, non-spore-forming, short rod-shaped bacterium that was isolated from a wastewater treatment plant in Constance, Germany. It is of interest because of its ability to degrade o-phthalate and a wide variety of aromatic compounds with nitrate as an electron acceptor. Elucidation of the o-phthalate degradation pathway may help to improve the treatment of phthalate-containing wastes in the future. Here, we describe the features of this organism, together with the draft genome sequence information and annotation. The draft genome consists of 4 contigs with 3,908,301 bp and an overall G + C content of 66.08 %. Out of 3,712 total genes predicted, 3,625 genes code for proteins and 87 genes for RNAs. The majority of the protein-encoding genes (83.51 %) were assigned a putative function while those remaining were annotated as hypothetical proteins.eng
dc.description.versionpublishedeng
dc.identifier.doi10.1186/s40793-015-0079-9eng
dc.identifier.ppn452395593
dc.identifier.urihttps://kops.uni-konstanz.de/handle/123456789/32259
dc.language.isoengeng
dc.rightsAttribution 4.0 International
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjectAzoarcus sp. strain PA01T, o-phthalate degradation, Rhodocyclaceae, Betaproteobacteria, anaerobic degradation, wastewater treatment plant, pollutanteng
dc.subject.ddc570eng
dc.titleDraft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01<sup>T</sup>eng
dc.typeJOURNAL_ARTICLEeng
dspace.entity.typePublication
kops.citation.bibtex
@article{Junghare2015Draft-32259,
  year={2015},
  doi={10.1186/s40793-015-0079-9},
  title={Draft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01<sup>T</sup>},
  volume={10},
  journal={Standards in Genomic Sciences},
  author={Junghare, Madan and Patil, Yogita and Schink, Bernhard},
  note={Article Number: 90}
}
kops.citation.iso690JUNGHARE, Madan, Yogita PATIL, Bernhard SCHINK, 2015. Draft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01T. In: Standards in Genomic Sciences. 2015, 10, 90. eISSN 1944-3277. Available under: doi: 10.1186/s40793-015-0079-9deu
kops.citation.iso690JUNGHARE, Madan, Yogita PATIL, Bernhard SCHINK, 2015. Draft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01T. In: Standards in Genomic Sciences. 2015, 10, 90. eISSN 1944-3277. Available under: doi: 10.1186/s40793-015-0079-9eng
kops.citation.rdf
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/32259">
    <dc:contributor>Patil, Yogita</dc:contributor>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/32259"/>
    <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/32259/3/Junghare_0-309862.pdf"/>
    <dc:contributor>Schink, Bernhard</dc:contributor>
    <dcterms:issued>2015</dcterms:issued>
    <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/32259/3/Junghare_0-309862.pdf"/>
    <dcterms:rights rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dc:creator>Patil, Yogita</dc:creator>
    <dc:creator>Junghare, Madan</dc:creator>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2015-11-26T12:37:19Z</dc:date>
    <dcterms:abstract xml:lang="eng">Azoarcus sp. strain PA01&lt;sup&gt;T&lt;/sup&gt; belongs to the genus Azoarcus, of the family Rhodocyclaceae within the class Betaproteobacteria. It is a facultatively anaerobic, mesophilic, non-motile, Gram-stain negative, non-spore-forming, short rod-shaped bacterium that was isolated from a wastewater treatment plant in Constance, Germany. It is of interest because of its ability to degrade o-phthalate and a wide variety of aromatic compounds with nitrate as an electron acceptor. Elucidation of the o-phthalate degradation pathway may help to improve the treatment of phthalate-containing wastes in the future. Here, we describe the features of this organism, together with the draft genome sequence information and annotation. The draft genome consists of 4 contigs with 3,908,301 bp and an overall G + C content of 66.08 %. Out of 3,712 total genes predicted, 3,625 genes code for proteins and 87 genes for RNAs. The majority of the protein-encoding genes (83.51 %) were assigned a putative function while those remaining were annotated as hypothetical proteins.</dcterms:abstract>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2015-11-26T12:37:19Z</dcterms:available>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/28"/>
    <dc:contributor>Junghare, Madan</dc:contributor>
    <dc:language>eng</dc:language>
    <dcterms:title>Draft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01&lt;sup&gt;T&lt;/sup&gt;</dcterms:title>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/28"/>
    <dc:creator>Schink, Bernhard</dc:creator>
    <dc:rights>Attribution 4.0 International</dc:rights>
  </rdf:Description>
</rdf:RDF>
kops.description.openAccessopenaccessgoldeng
kops.flag.knbibliographytrue
kops.identifier.nbnurn:nbn:de:bsz:352-0-309862
kops.sourcefieldStandards in Genomic Sciences. 2015, <b>10</b>, 90. eISSN 1944-3277. Available under: doi: 10.1186/s40793-015-0079-9deu
kops.sourcefield.plainStandards in Genomic Sciences. 2015, 10, 90. eISSN 1944-3277. Available under: doi: 10.1186/s40793-015-0079-9deu
kops.sourcefield.plainStandards in Genomic Sciences. 2015, 10, 90. eISSN 1944-3277. Available under: doi: 10.1186/s40793-015-0079-9eng
relation.isAuthorOfPublicationf74ad05e-0ce1-4cf9-9bb7-e03724cbaca3
relation.isAuthorOfPublication1b00956e-7aaf-489f-aa98-4e26a6e6de7f
relation.isAuthorOfPublication1dbcb3b0-f96e-436f-b6d4-d2e5d47bc728
relation.isAuthorOfPublication.latestForDiscoveryf74ad05e-0ce1-4cf9-9bb7-e03724cbaca3
source.bibliographicInfo.articleNumber90eng
source.bibliographicInfo.volume10eng
source.identifier.eissn1944-3277eng
source.periodicalTitleStandards in Genomic Scienceseng

Dateien

Originalbündel

Gerade angezeigt 1 - 1 von 1
Vorschaubild nicht verfügbar
Name:
Junghare_0-309862.pdf
Größe:
1.56 MB
Format:
Adobe Portable Document Format
Beschreibung:
Junghare_0-309862.pdf
Junghare_0-309862.pdfGröße: 1.56 MBDownloads: 442

Lizenzbündel

Gerade angezeigt 1 - 1 von 1
Vorschaubild nicht verfügbar
Name:
license.txt
Größe:
3.88 KB
Format:
Item-specific license agreed upon to submission
Beschreibung:
license.txt
license.txtGröße: 3.88 KBDownloads: 0