A microsatellite baseline for genetic stock identification of European Atlantic salmon (Salmo salar L.)

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2018
Autor:innen
Gilbey, John
Coughlan, Jamie
Wennevik, Vidar
Prodöhl, Paulo
Stevens, Jamie R.
Garcia de Leaniz, Carlos
Ensing, Dennis
Cauwelier, Eef
Cherbonnel, Corrine
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ICES Journal of Marine Science. 2018, 75(2), pp. 662-674. ISSN 1054-3139. eISSN 1095-9289. Available under: doi: 10.1093/icesjms/fsx184
Zusammenfassung

Atlantic salmon (Salmo salar L.) populations from different river origins mix in the North Atlantic during the marine life stage. To facilitate marine stock identification, we developed a genetic baseline covering the European component of the species’ range excluding the Baltic Sea, from the Russian River Megra in the north-east, the Icelandic Ellidaar in the west, and the Spanish Ulla in the south, spanning 3737 km North to South and 2717 km East to West. The baseline encompasses data for 14 microsatellites for 26 822 individual fish from 13 countries, 282 rivers, and 467 sampling sites. A hierarchy of regional genetic assignment units was defined using a combination of distance-based and Bayesian clustering. At the top level, three assignment units were identified comprising northern, southern, and Icelandic regions. A second assignment level was also defined, comprising eighteen and twenty-nine regional units for accurate individual assignment and mixed stock estimates respectively. The baseline provides the most comprehensive geographical coverage for an Atlantic salmon genetic data-set, and a unique resource for the conservation and management of the species in Europe. It is freely available to researchers to facilitate identification of the natal origin of European salmon.

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Fachgebiet (DDC)
570 Biowissenschaften, Biologie
Schlagwörter
Atlantic salmon, genetic stock identification, individual assignment, marine ecology, microsatellites
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ISO 690GILBEY, John, Jamie COUGHLAN, Vidar WENNEVIK, Paulo PRODÖHL, Jamie R. STEVENS, Carlos GARCIA DE LEANIZ, Dennis ENSING, Eef CAUWELIER, Corrine CHERBONNEL, Gonzalo MACHADO-SCHIAFFINO, 2018. A microsatellite baseline for genetic stock identification of European Atlantic salmon (Salmo salar L.). In: ICES Journal of Marine Science. 2018, 75(2), pp. 662-674. ISSN 1054-3139. eISSN 1095-9289. Available under: doi: 10.1093/icesjms/fsx184
BibTex
@article{Gilbey2018-03-01micro-44666,
  year={2018},
  doi={10.1093/icesjms/fsx184},
  title={A microsatellite baseline for genetic stock identification of European Atlantic salmon (Salmo salar L.)},
  number={2},
  volume={75},
  issn={1054-3139},
  journal={ICES Journal of Marine Science},
  pages={662--674},
  author={Gilbey, John and Coughlan, Jamie and Wennevik, Vidar and Prodöhl, Paulo and Stevens, Jamie R. and Garcia de Leaniz, Carlos and Ensing, Dennis and Cauwelier, Eef and Cherbonnel, Corrine and Machado-Schiaffino, Gonzalo}
}
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