Type of Publication: | Journal article |
URI (citable link): | http://nbn-resolving.de/urn:nbn:de:bsz:352-opus-40664 |
Author: | Weiss, Manfred S.; Mander, Gerd; Hedderich, Reiner; Diederichs, Kay; Ermler, Ulrich; Warkentin, Eberhard |
Year of publication: | 2004 |
Published in: | Acta Crystallographica, Section D ; 60 (2004), 4. - pp. 686-695. - ISSN 0907-4449 |
Pubmed ID: | 15039557 |
DOI (citable link): | https://dx.doi.org/10.1107/S0907444904003002 |
Summary: |
The structure of the 115 amino-acid residue protein DsvC was determined based on the anomalous scattering provided by the five S atoms present in the structure. By collecting the diffraction data at a wavelength of 1.9 A, the anomalous signal provided by the S atoms was enhanced. However, significant radiation damage occurred during the course of the experiment, which led to differences between different parts of the data set. Only by dividing the total data set into five data sets was it possible to obtain phases; these could then be successfully extended to allow structure determination by the automated model-building program ARP/wARP. A computational correction for the radiation damage was found to significantly improve the success rate in determining the heavy-atom substructure and to improve phasing and refinement statistics.
|
Subject (DDC): | 570 Biosciences, Biology |
Link to License: | Attribution-NonCommercial-NoDerivs 2.0 Generic |
Bibliography of Konstanz: | Yes |
WEISS, Manfred S., Gerd MANDER, Reiner HEDDERICH, Kay DIEDERICHS, Ulrich ERMLER, Eberhard WARKENTIN, 2004. Determination of a novel structure by a combination of long-wavelength sulfur phasing and radiation-damage-induced phasing. In: Acta Crystallographica, Section D. 60(4), pp. 686-695. ISSN 0907-4449. Available under: doi: 10.1107/S0907444904003002
@article{Weiss2004Deter-8593, title={Determination of a novel structure by a combination of long-wavelength sulfur phasing and radiation-damage-induced phasing}, year={2004}, doi={10.1107/S0907444904003002}, number={4}, volume={60}, issn={0907-4449}, journal={Acta Crystallographica, Section D}, pages={686--695}, author={Weiss, Manfred S. and Mander, Gerd and Hedderich, Reiner and Diederichs, Kay and Ermler, Ulrich and Warkentin, Eberhard} }
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bibo="http://purl.org/ontology/bibo/" xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:void="http://rdfs.org/ns/void#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > <rdf:Description rdf:about="https://kops.uni-konstanz.de/rdf/resource/123456789/8593"> <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2011-03-24T17:44:57Z</dcterms:available> <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/> <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/rdf/resource/123456789/28"/> <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/rdf/resource/123456789/28"/> <dc:creator>Mander, Gerd</dc:creator> <dc:contributor>Hedderich, Reiner</dc:contributor> <dc:creator>Hedderich, Reiner</dc:creator> <dc:creator>Warkentin, Eberhard</dc:creator> <dc:contributor>Diederichs, Kay</dc:contributor> <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/8593/1/Determination_of_a_novel_structure_by_a_combination.pdf"/> <foaf:homepage rdf:resource="http://localhost:8080/jspui"/> <bibo:uri rdf:resource="http://kops.uni-konstanz.de/handle/123456789/8593"/> <dc:format>application/pdf</dc:format> <dc:contributor>Ermler, Ulrich</dc:contributor> <dc:rights>Attribution-NonCommercial-NoDerivs 2.0 Generic</dc:rights> <dc:contributor>Weiss, Manfred S.</dc:contributor> <dc:contributor>Mander, Gerd</dc:contributor> <dc:creator>Weiss, Manfred S.</dc:creator> <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/8593/1/Determination_of_a_novel_structure_by_a_combination.pdf"/> <dc:creator>Ermler, Ulrich</dc:creator> <dc:creator>Diederichs, Kay</dc:creator> <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2011-03-24T17:44:57Z</dc:date> <dc:contributor>Warkentin, Eberhard</dc:contributor> <dc:language>eng</dc:language> <dcterms:issued>2004</dcterms:issued> <dcterms:abstract xml:lang="eng">The structure of the 115 amino-acid residue protein DsvC was determined based on the anomalous scattering provided by the five S atoms present in the structure. By collecting the diffraction data at a wavelength of 1.9 A, the anomalous signal provided by the S atoms was enhanced. However, significant radiation damage occurred during the course of the experiment, which led to differences between different parts of the data set. Only by dividing the total data set into five data sets was it possible to obtain phases; these could then be successfully extended to allow structure determination by the automated model-building program ARP/wARP. A computational correction for the radiation damage was found to significantly improve the success rate in determining the heavy-atom substructure and to improve phasing and refinement statistics.</dcterms:abstract> <dcterms:title>Determination of a novel structure by a combination of long-wavelength sulfur phasing and radiation-damage-induced phasing</dcterms:title> <dcterms:rights rdf:resource="http://creativecommons.org/licenses/by-nc-nd/2.0/"/> <dcterms:bibliographicCitation>First publ. in: Acta Crystallographica, Section D 60 (2004), pp. 686-695</dcterms:bibliographicCitation> </rdf:Description> </rdf:RDF>
Determination_of_a_novel_structure_by_a_combination.pdf | 389 |