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High Accuracy Classification of Developmental Toxicants by In Vitro Tests of Human Neuroepithelial and Cardiomyoblast Differentiation

High Accuracy Classification of Developmental Toxicants by In Vitro Tests of Human Neuroepithelial and Cardiomyoblast Differentiation

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SEIDEL, Florian, Anna CHERIANIDOU, Franziska KAPPENBERG, Nadine DRESER, Jonathan BLUM, Tanja WALDMANN, Marcel LEIST, Jörg RAHNENFÜHRER, Agapios SACHINIDIS, Jan Georg HENGSTLER, 2022. High Accuracy Classification of Developmental Toxicants by In Vitro Tests of Human Neuroepithelial and Cardiomyoblast Differentiation. In: Cells. MDPI. 11(21), 3404. eISSN 2073-4409. Available under: doi: 10.3390/cells11213404

@article{Seidel2022-10-27Accur-59155, title={High Accuracy Classification of Developmental Toxicants by In Vitro Tests of Human Neuroepithelial and Cardiomyoblast Differentiation}, year={2022}, doi={10.3390/cells11213404}, number={21}, volume={11}, journal={Cells}, author={Seidel, Florian and Cherianidou, Anna and Kappenberg, Franziska and Dreser, Nadine and Blum, Jonathan and Waldmann, Tanja and Leist, Marcel and Rahnenführer, Jörg and Sachinidis, Agapios and Hengstler, Jan Georg}, note={Article Number: 3404} }

<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bibo="http://purl.org/ontology/bibo/" xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:void="http://rdfs.org/ns/void#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > <rdf:Description rdf:about="https://kops.uni-konstanz.de/rdf/resource/123456789/59155"> <dc:contributor>Hengstler, Jan Georg</dc:contributor> <dcterms:title>High Accuracy Classification of Developmental Toxicants by In Vitro Tests of Human Neuroepithelial and Cardiomyoblast Differentiation</dcterms:title> <dc:contributor>Leist, Marcel</dc:contributor> <dc:contributor>Rahnenführer, Jörg</dc:contributor> <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/59155/1/Seidel_2-1ebqxsskez0rr8.pdf"/> <dc:contributor>Dreser, Nadine</dc:contributor> <dc:creator>Seidel, Florian</dc:creator> <dc:creator>Sachinidis, Agapios</dc:creator> <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2022-11-14T14:53:07Z</dcterms:available> <dc:creator>Kappenberg, Franziska</dc:creator> <dc:creator>Hengstler, Jan Georg</dc:creator> <dc:creator>Dreser, Nadine</dc:creator> <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/59155/1/Seidel_2-1ebqxsskez0rr8.pdf"/> <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2022-11-14T14:53:07Z</dc:date> <foaf:homepage rdf:resource="http://localhost:8080/jspui"/> <dcterms:abstract xml:lang="eng">Human-relevant tests to predict developmental toxicity are urgently needed. A currently intensively studied approach makes use of differentiating human stem cells to measure chemically-induced deviations of the normal developmental program, as in a recent study based on cardiac differentiation (UKK2). Here, we (i) tested the performance of an assay modeling neuroepithelial differentiation (UKN1), and (ii) explored the benefit of combining assays (UKN1 and UKK2) that model different germ layers. Substance-induced cytotoxicity and genome-wide expression profiles of 23 teratogens and 16 non-teratogens at human-relevant concentrations were generated and used for statistical classification, resulting in accuracies of the UKN1 assay of 87-90%. A comparison to the UKK2 assay (accuracies of 90-92%) showed, in general, a high congruence in compound classification that may be explained by the fact that there was a high overlap of signaling pathways. Finally, the combination of both assays improved the prediction compared to each test alone, and reached accuracies of 92-95%. Although some compounds were misclassified by the individual tests, we conclude that UKN1 and UKK2 can be used for a reliable detection of teratogens in vitro, and that a combined analysis of tests that differentiate hiPSCs into different germ layers and cell types can even further improve the prediction of developmental toxicants.</dcterms:abstract> <dc:contributor>Cherianidou, Anna</dc:contributor> <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/> <dc:creator>Rahnenführer, Jörg</dc:creator> <dc:contributor>Seidel, Florian</dc:contributor> <dc:creator>Waldmann, Tanja</dc:creator> <dc:rights>Attribution 4.0 International</dc:rights> <dc:creator>Leist, Marcel</dc:creator> <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/59155"/> <dc:creator>Cherianidou, Anna</dc:creator> <dcterms:rights rdf:resource="http://creativecommons.org/licenses/by/4.0/"/> <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/rdf/resource/123456789/28"/> <dc:contributor>Kappenberg, Franziska</dc:contributor> <dcterms:issued>2022-10-27</dcterms:issued> <dc:contributor>Sachinidis, Agapios</dc:contributor> <dc:contributor>Blum, Jonathan</dc:contributor> <dc:language>eng</dc:language> <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/rdf/resource/123456789/28"/> <dc:contributor>Waldmann, Tanja</dc:contributor> <dc:creator>Blum, Jonathan</dc:creator> </rdf:Description> </rdf:RDF>

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