Journal article:
Visual Understanding of Metabolic Pathways Across Organisms using Layout in Two and a Half Dimensions

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2004
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We propose a method for visualizing a set of related metabolic pathways across organisms using 2 1/2 dimensional graph visualization. Interdependent,two-dimensional layouts of each pathway are stacked on top of each other so that biologists get a full picture of subtle and significant differences among the pathways. The (dis)similarities between pathways are expressed by the Hamming distances of the underlying graphs which are used to compute a stacking order for the pathways. Layouts are determined by a global layout of the union of all pathway graphs using a variant of the proven Sugiyama approach for layered graph drawing. Our variant layout approach allows edges to cross if they appear in different graphs.
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004 Computer Science
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Journal of Integrative Bioinformatics ; 1 (2004), 1. - 2
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ISO 690BRANDES, Ulrik, Tim DWYER, Falk SCHREIBER, 2004. Visual Understanding of Metabolic Pathways Across Organisms using Layout in Two and a Half Dimensions. In: Journal of Integrative Bioinformatics. 1(1), 2. Available under: doi: 10.2390/biecoll-jib-2004-2
BibTex
@article{Brandes2004Visua-5694,
  year={2004},
  doi={10.2390/biecoll-jib-2004-2},
  title={Visual Understanding of Metabolic Pathways Across Organisms using Layout in Two and a Half Dimensions},
  number={1},
  volume={1},
  journal={Journal of Integrative Bioinformatics},
  author={Brandes, Ulrik and Dwyer, Tim and Schreiber, Falk},
  note={Article Number: 2}
}
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