KOPS - The Institutional Repository of the University of Konstanz

Subcellular localization charts : a new visual methodology for the semi-automatic localization of protein-related data sets

Subcellular localization charts : a new visual methodology for the semi-automatic localization of protein-related data sets

Cite This

Files in this item

Files Size Format View

There are no files associated with this item.

SOMMER, Björn, Benjamin KORMEIER, Pavel S. DEMENKOV, Patrizio ARRIGO, Klaus HIPPE, Özgür ATES, Alexey V. KOCHETOV, Vladimir A. IVANISENKO, Nikolay A. KOLCHANOV, Ralf HOFESTÄDT, 2013. Subcellular localization charts : a new visual methodology for the semi-automatic localization of protein-related data sets. In: Journal of bioinformatics and computational biology. 11(1), 1340005. ISSN 0219-7200. eISSN 1757-6334. Available under: doi: 10.1142/S0219720013400052

@article{Sommer2013-02Subce-44743, title={Subcellular localization charts : a new visual methodology for the semi-automatic localization of protein-related data sets}, year={2013}, doi={10.1142/S0219720013400052}, number={1}, volume={11}, issn={0219-7200}, journal={Journal of bioinformatics and computational biology}, author={Sommer, Björn and Kormeier, Benjamin and Demenkov, Pavel S. and Arrigo, Patrizio and Hippe, Klaus and Ates, Özgür and Kochetov, Alexey V. and Ivanisenko, Vladimir A. and Kolchanov, Nikolay A. and Hofestädt, Ralf}, note={Article Number: 1340005} }

<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bibo="http://purl.org/ontology/bibo/" xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:void="http://rdfs.org/ns/void#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > <rdf:Description rdf:about="https://kops.uni-konstanz.de/rdf/resource/123456789/44743"> <dc:creator>Hippe, Klaus</dc:creator> <dcterms:title>Subcellular localization charts : a new visual methodology for the semi-automatic localization of protein-related data sets</dcterms:title> <dc:contributor>Hippe, Klaus</dc:contributor> <dcterms:issued>2013-02</dcterms:issued> <dc:contributor>Hofestädt, Ralf</dc:contributor> <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/> <dc:creator>Kochetov, Alexey V.</dc:creator> <dc:creator>Kolchanov, Nikolay A.</dc:creator> <dc:contributor>Arrigo, Patrizio</dc:contributor> <foaf:homepage rdf:resource="http://localhost:8080/jspui"/> <dc:contributor>Ates, Özgür</dc:contributor> <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/44743"/> <dc:creator>Hofestädt, Ralf</dc:creator> <dc:contributor>Kolchanov, Nikolay A.</dc:contributor> <dcterms:abstract xml:lang="eng">The CELLmicrocosmos PathwayIntegration (CmPI) was developed to support and visualize the subcellular localization prediction of protein-related data such as protein-interaction networks. From the start it was possible to manually analyze the localizations by using an interactive table. It was, however, quite complicated to compare and analyze the different localization results derived from data integration as well as text-mining-based databases. The current software release provides a new interactive visual workflow, the Subcellular Localization Charts. As an application case, a MUPP1-related protein-protein interaction network is localized and semi-automatically analyzed. It will be shown that the workflow was dramatically improved and simplified. In addition, it is now possible to use custom protein-related data by using the SBML format and get a view of predicted protein localizations mapped onto a virtual cell model.</dcterms:abstract> <dc:creator>Demenkov, Pavel S.</dc:creator> <dc:creator>Kormeier, Benjamin</dc:creator> <dc:contributor>Kochetov, Alexey V.</dc:contributor> <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2019-01-28T11:24:41Z</dc:date> <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2019-01-28T11:24:41Z</dcterms:available> <dc:contributor>Sommer, Björn</dc:contributor> <dc:creator>Arrigo, Patrizio</dc:creator> <dc:creator>Ivanisenko, Vladimir A.</dc:creator> <dc:contributor>Ivanisenko, Vladimir A.</dc:contributor> <dc:language>eng</dc:language> <dc:contributor>Demenkov, Pavel S.</dc:contributor> <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/rdf/resource/123456789/36"/> <dc:creator>Sommer, Björn</dc:creator> <dc:contributor>Kormeier, Benjamin</dc:contributor> <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/rdf/resource/123456789/36"/> <dc:creator>Ates, Özgür</dc:creator> </rdf:Description> </rdf:RDF>

This item appears in the following Collection(s)

Search KOPS


Browse

My Account