Publikation:

Mathematical modelling reveals compound-specific stress pathway activity

Lade...
Vorschaubild

Dateien

Burgers_2-459kn7jtwgta4.pdf
Burgers_2-459kn7jtwgta4.pdfGröße: 2.75 MBDownloads: 59

Datum

2025

Autor:innen

Burgers, Elsje J.
Danilyuk, Tamara Y.
Sharma, Raju P.
Renner, Nadine
Verlohner, Andreas
Rocker, Nicole
Ternes, Philipp
Beltman, Joost B.
et al.

Herausgeber:innen

Kontakt

ISSN der Zeitschrift

Electronic ISSN

ISBN

Bibliografische Daten

Verlag

Schriftenreihe

Auflagebezeichnung

ArXiv-ID

Internationale Patentnummer

Link zur Lizenz

Angaben zur Forschungsförderung

Institutionen der Bundesrepublik Deutschland: 114027005
Institutionen der Bundesrepublik Deutschland: 031L0243

Projekt

Open Access-Veröffentlichung
Open Access Hybrid
Core Facility der Universität Konstanz

Gesperrt bis

Titel in einer weiteren Sprache

Publikationstyp
Zeitschriftenartikel
Publikationsstatus
Published

Erschienen in

Toxicology. Elsevier. 2025, 518, 154234. ISSN 0300-483X. eISSN 1879-3185. Verfügbar unter: doi: 10.1016/j.tox.2025.154234

Zusammenfassung

Drug-induced liver injury (DILI) is a major problem for the drug development industry. It has been suggested that activation of stress pathways within cells is an important indicator of DILI. In this project, we aimed to develop a mathematical model of invoked stress responses by three compounds with high DILI liability: nitrofurantoin, diclofenac and ketoconazole. To this end, we used imaging data from HepG2 cells and cell-associated compound and intracellular glutathione measurements. We initially developed a model for the integrated and oxidative stress responses following nitrofurantoin exposure. Subsequently, we expanded this to simulate responses to diclofenac and ketoconazole. To apply the model to these compounds multiple parameters required recalibration, yet the structure of the model was unchanged. Our analysis shows that the magnitude of interactions between transcription factors and downstream targets can differ even when the activated pathways are the same.

Zusammenfassung in einer weiteren Sprache

Fachgebiet (DDC)
570 Biowissenschaften, Biologie

Schlagwörter

DILI, Oxidative stress response, Integrated stress response, Mathematical modelling

Konferenz

Rezension
undefined / . - undefined, undefined

Forschungsvorhaben

Organisationseinheiten

Zeitschriftenheft

Zugehörige Datensätze in KOPS

Zitieren

ISO 690BURGERS, Elsje J., Tamara Y. DANILYUK, Raju P. SHARMA, Nadine RENNER, Andreas VERLOHNER, Nicole ROCKER, Philipp TERNES, Marcel LEIST, Stefan SCHILDKNECHT, Joost B. BELTMAN, 2025. Mathematical modelling reveals compound-specific stress pathway activity. In: Toxicology. Elsevier. 2025, 518, 154234. ISSN 0300-483X. eISSN 1879-3185. Verfügbar unter: doi: 10.1016/j.tox.2025.154234
BibTex
@article{Burgers2025-12Mathe-74249,
  title={Mathematical modelling reveals compound-specific stress pathway activity},
  year={2025},
  doi={10.1016/j.tox.2025.154234},
  volume={518},
  issn={0300-483X},
  journal={Toxicology},
  author={Burgers, Elsje J. and Danilyuk, Tamara Y. and Sharma, Raju P. and Renner, Nadine and Verlohner, Andreas and Rocker, Nicole and Ternes, Philipp and Leist, Marcel and Schildknecht, Stefan and Beltman, Joost B.},
  note={Article Number: 154234}
}
RDF
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/74249">
    <dc:contributor>Ternes, Philipp</dc:contributor>
    <dcterms:issued>2025-12</dcterms:issued>
    <dcterms:abstract>Drug-induced liver injury (DILI) is a major problem for the drug development industry. It has been suggested that activation of stress pathways within cells is an important indicator of DILI. In this project, we aimed to develop a mathematical model of invoked stress responses by three compounds with high DILI liability: nitrofurantoin, diclofenac and ketoconazole. To this end, we used imaging data from HepG2 cells and cell-associated compound and intracellular glutathione measurements. We initially developed a model for the integrated and oxidative stress responses following nitrofurantoin exposure. Subsequently, we expanded this to simulate responses to diclofenac and ketoconazole. To apply the model to these compounds multiple parameters required recalibration, yet the structure of the model was unchanged. Our analysis shows that the magnitude of interactions between transcription factors and downstream targets can differ even when the activated pathways are the same.</dcterms:abstract>
    <dc:creator>Leist, Marcel</dc:creator>
    <dcterms:rights rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
    <dc:contributor>Sharma, Raju P.</dc:contributor>
    <dc:creator>Danilyuk, Tamara Y.</dc:creator>
    <dc:contributor>Danilyuk, Tamara Y.</dc:contributor>
    <dc:contributor>Schildknecht, Stefan</dc:contributor>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2025-08-08T08:19:41Z</dcterms:available>
    <dcterms:title>Mathematical modelling reveals compound-specific stress pathway activity</dcterms:title>
    <dc:creator>Renner, Nadine</dc:creator>
    <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/74249/4/Burgers_2-459kn7jtwgta4.pdf"/>
    <dc:creator>Sharma, Raju P.</dc:creator>
    <dc:creator>Ternes, Philipp</dc:creator>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dc:contributor>Verlohner, Andreas</dc:contributor>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2025-08-08T08:19:41Z</dc:date>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/28"/>
    <dc:contributor>Renner, Nadine</dc:contributor>
    <dc:contributor>Burgers, Elsje J.</dc:contributor>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/28"/>
    <dc:contributor>Rocker, Nicole</dc:contributor>
    <dc:contributor>Leist, Marcel</dc:contributor>
    <dc:creator>Beltman, Joost B.</dc:creator>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/74249"/>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/74249/4/Burgers_2-459kn7jtwgta4.pdf"/>
    <dc:creator>Verlohner, Andreas</dc:creator>
    <dc:creator>Rocker, Nicole</dc:creator>
    <dc:contributor>Beltman, Joost B.</dc:contributor>
    <dc:creator>Schildknecht, Stefan</dc:creator>
    <dc:creator>Burgers, Elsje J.</dc:creator>
    <dc:language>eng</dc:language>
    <dc:rights>Attribution 4.0 International</dc:rights>
  </rdf:Description>
</rdf:RDF>

Interner Vermerk

xmlui.Submission.submit.DescribeStep.inputForms.label.kops_note_fromSubmitter

Kontakt
URL der Originalveröffentl.

Prüfdatum der URL

Prüfungsdatum der Dissertation

Finanzierungsart

Kommentar zur Publikation

Allianzlizenz
Corresponding Authors der Uni Konstanz vorhanden
Internationale Co-Autor:innen
Universitätsbibliographie
Ja
Begutachtet
Ja
Diese Publikation teilen