OPTIMAS-DW : a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize

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2012
Autor:innen
Colmsee, Christian
Mascher, Martin
Czauderna, Tobias
Hartmann, Anja
Schlüter, Urte
Zellerhoff, Nina
Schmitz, Jessica
Bräutigam, Andrea
Sonnewald, Uwe
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Maize is a major crop plant, grown for human and animal nutrition, as well as a renewable resource for bioenergy. When looking at the problems of limited fossil fuels, the growth of the world's population or the world's climate change, it is important to find ways to increase the yield and biomass of maize and to study how it reacts to specific abiotic and biotic stress situations. Within the OPTIMAS systems biology project maize plants were grown under a large set of controlled stress conditions, phenotypically characterised and plant material was harvested to analyse the effect of specific environmental conditions or developmental stages. Transcriptomic, metabolomic, ionomic and proteomic parameters were measured from the same plant material allowing the comparison of results across different omics domains. A data warehouse was developed to store experimental data as well as analysis results of the performed experiments.

Zusammenfassung in einer weiteren Sprache
Fachgebiet (DDC)
004 Informatik
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Maize, Zea mays, Database, WGCNA, Biomass, Yield, Data integration, Transcriptomics, Metabolomics, Phenomics
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ISO 690COLMSEE, Christian, Martin MASCHER, Tobias CZAUDERNA, Anja HARTMANN, Urte SCHLÜTER, Nina ZELLERHOFF, Jessica SCHMITZ, Andrea BRÄUTIGAM, Falk SCHREIBER, Uwe SONNEWALD, 2012. OPTIMAS-DW : a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. In: BMC Plant Biology. 2012, 12(1), 245. ISSN 1471-2229. eISSN 1471-2229. Available under: doi: 10.1186/1471-2229-12-245
BibTex
@article{Colmsee2012OPTIM-38553,
  year={2012},
  doi={10.1186/1471-2229-12-245},
  title={OPTIMAS-DW : a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize},
  number={1},
  volume={12},
  issn={1471-2229},
  journal={BMC Plant Biology},
  author={Colmsee, Christian and Mascher, Martin and Czauderna, Tobias and Hartmann, Anja and Schlüter, Urte and Zellerhoff, Nina and Schmitz, Jessica and Bräutigam, Andrea and Schreiber, Falk and Sonnewald, Uwe},
  note={Article Number: 245}
}
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