Kinetic Modelling with the Systems Biology Modelling Environment SyBME

Junker, Björn H.; Koschützki, Dirk; Schreiber, Falk

Kinetic Modelling with the Systems Biology Modelling Environment SyBME

Files

There are no files associated with this item.

Date

2006

Authors

Junker, Björn H.

Koschützki, Dirk

Schreiber, Falk

DOI (citable link)

10.2390/biecoll-jib-2006-18

Collections

Informatik und Informationswissenschaft

Publication type

Journal article

Publication status

Published

Published in

Journal of Integrative Bioinformatics : JIB ; 3 (2006), 1. - pp. 11-20. - ISSN 1432-4385. - eISSN 1613-4516

Abstract

Kinetic modelling and simulation is an important approach in systems biology. While the focus of current modelling tools is on simulation, model development is a highly iterative process which is currently only partly supported. To support the development of biochemical models, their simulation, and graphical understanding, we designed and implemented SyBME, the Systems Biology Modelling Environment. Here we present the architecture and the main components of SyBME and show its use by modelling sucrose breakdown in developing potato tubers.

Subject (DDC)

004 Computer Science

Cite This

ISO 690

JUNKER, Björn H., Dirk KOSCHÜTZKI, Falk SCHREIBER, 2006. Kinetic Modelling with the Systems Biology Modelling Environment SyBME. In: Journal of Integrative Bioinformatics : JIB. 3(1), pp. 11-20. ISSN 1432-4385. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2006-18

BibTex

@article{Junker2006Kinet-40459,
  year={2006},
  doi={10.2390/biecoll-jib-2006-18},
  title={Kinetic Modelling with the Systems Biology Modelling Environment SyBME},
  number={1},
  volume={3},
  issn={1432-4385},
  journal={Journal of Integrative Bioinformatics : JIB},
  pages={11--20},
  author={Junker, Björn H. and Koschützki, Dirk and Schreiber, Falk}
}

RDF

<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/40459">
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/40459"/>
    <dcterms:issued>2006</dcterms:issued>
    <dcterms:abstract xml:lang="eng">Kinetic modelling and simulation is an important approach in systems biology. While the focus of current modelling tools is on simulation, model development is a highly iterative process which is currently only partly supported. To support the development of biochemical models, their simulation, and graphical understanding, we designed and implemented SyBME, the Systems Biology Modelling Environment. Here we present the architecture and the main components of SyBME and show its use by modelling sucrose breakdown in developing potato tubers.</dcterms:abstract>
    <dc:contributor>Schreiber, Falk</dc:contributor>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:contributor>Junker, Björn H.</dc:contributor>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-10-30T13:23:03Z</dcterms:available>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dcterms:title>Kinetic Modelling with the Systems Biology Modelling Environment SyBME</dcterms:title>
    <dc:creator>Koschützki, Dirk</dc:creator>
    <dc:creator>Schreiber, Falk</dc:creator>
    <dc:language>eng</dc:language>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:creator>Junker, Björn H.</dc:creator>
    <dc:contributor>Koschützki, Dirk</dc:contributor>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-10-30T13:23:03Z</dc:date>
  </rdf:Description>
</rdf:RDF>

Bibliography of Konstanz

No