Visualising Metabolic Pathways and Networks : Past, Present, Future

Schreiber, Falk; Grafahrend-Belau, Eva; Kohlbacher, Oliver; Mi, Huaiyu

Visualising Metabolic Pathways and Networks : Past, Present, Future

Dateien

Zu diesem Dokument gibt es keine Dateien.

Datum

2022

Autor:innen

Schreiber, Falk

Grafahrend-Belau, Eva

Kohlbacher, Oliver

Mi, Huaiyu

DOI (zitierfähiger Link)

https://doi.org/10.1007/978-981-16-6795-4_12

Sammlungen

Informatik und Informationswissenschaft

Publikationstyp

Beitrag zu einem Sammelband

Publikationsstatus

Published

Erschienen in

CHEN, Ming, ed. and others. Integrative Bioinformatics. Singapore: Springer, 2022, pp. 237-267. ISBN 978-981-16-6795-4. Available under: doi: 10.1007/978-981-16-6795-4_12

Zusammenfassung

Visualisations of metabolites and metabolic pathways have been used since the early years of research in biology, and pathway maps have become very popular in biochemistry textbooks, on posters, as well as in electronic resources and web pages about metabolism. Visualisations help to present knowledge and support browsing through chemical structures, enzymes, reactions and pathways. In addition, visual and immersive analytics of metabolism connects network analysis algorithms and interactive visualisation methods to investigate structures in the network such as centralities, motifs and paths, or to compare pathways for finding differences between species or conditions. The graphical depiction of networks supports the mapping and investigation of additional data such as metabolomics, enzyme activity, flux and transcriptomics data, and the exploration of the data in the network context. It builds a foundation for investigating the dynamics of metabolic processes obtained either experimentally or via modelling and simulation. Here we discuss past, present and future of the visualisation of metabolic networks and pathways and provide links to several resources.

Fachgebiet (DDC)

004 Informatik

Schlagwörter

Visualisation · Metabolism · Metabolic networks · Visual analytics · Immersive analytics · Biovis

Zitieren

ISO 690

SCHREIBER, Falk, Eva GRAFAHREND-BELAU, Oliver KOHLBACHER, Huaiyu MI, 2022. Visualising Metabolic Pathways and Networks : Past, Present, Future. In: CHEN, Ming, ed. and others. Integrative Bioinformatics. Singapore: Springer, 2022, pp. 237-267. ISBN 978-981-16-6795-4. Available under: doi: 10.1007/978-981-16-6795-4_12

BibTex

@incollection{Schreiber2022Visua-57325,
  year={2022},
  doi={10.1007/978-981-16-6795-4_12},
  title={Visualising Metabolic Pathways and Networks : Past, Present, Future},
  isbn={978-981-16-6795-4},
  publisher={Springer},
  address={Singapore},
  booktitle={Integrative Bioinformatics},
  pages={237--267},
  editor={Chen, Ming},
  author={Schreiber, Falk and Grafahrend-Belau, Eva and Kohlbacher, Oliver and Mi, Huaiyu}
}

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