Specifications of Standards in Systems and Synthetic Biology

Lade...
Vorschaubild
Dateien
König_2-17stzd3juay6n4.pdf
König_2-17stzd3juay6n4.pdfGröße: 10.08 MBDownloads: 13
Datum
2015
Autor:innen
Bader, Gary D.
Golebiewski, Martin
Hucka, Michael
Kormeier, Benjamin
Le Novère, Nicolas
Myers, Chris
Nickerson, David
Waltemath, Dagmar
et al.
Herausgeber:innen
Kontakt
ISSN der Zeitschrift
Electronic ISSN
ISBN
Bibliografische Daten
Verlag
Schriftenreihe
Auflagebezeichnung
ArXiv-ID
Internationale Patentnummer
Link zur Lizenz
oops
Angaben zur Forschungsförderung
Projekt
Open Access-Veröffentlichung
Open Access Green
Core Facility der Universität Konstanz
Gesperrt bis
Titel in einer weiteren Sprache
Publikationstyp
Zeitschriftenartikel
Publikationsstatus
Published
Erschienen in
Journal of integrative bioinformatics. 2015, 12(2), 258. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2015-258
Zusammenfassung

Standards shape our everyday life. From nuts and bolts to electronic devices and technological processes, standardised products and processes are all around us. Standards have technological and economic benefits, such as making information exchange, production, and services more efficient. However, novel, innovative areas often either lack proper standards, or documents about standards in these areas are not available from a centralised platform or formal body (such as the International Standardisation Organisation). Systems and synthetic biology is a relatively novel area, and it is only in the last decade that the standardisation of data, information, and models related to systems and synthetic biology has become a community-wide effort. Several open standards have been established and are under continuous development as a community initiative. COMBINE, the ‘COmputational Modeling in BIology’ NEtwork has been established as an umbrella initiative to coordinate and promote the development of the various community standards and formats for computational models. There are yearly two meeting, HARMONY (Hackathons on Resources for Modeling in Biology), Hackathon-type meetings with a focus on development of the support for standards, and COMBINE forums, workshop-style events with oral presentations, discussion, poster, and breakout sessions for further developing the standards. For more information see http://co.mbine.org/. So far the different standards were published and made accessible through the standards’ web- pages or preprint services. The aim of this special issue is to provide a single, easily accessible and citable platform for the publication of standards in systems and synthetic biology. This special issue is intended to serve as a central access point to standards and related initiatives in systems and synthetic biology, it will be published annually to provide an opportunity for standard development groups to communicate updated specifications.

Zusammenfassung in einer weiteren Sprache
Fachgebiet (DDC)
004 Informatik
Schlagwörter
Konferenz
Rezension
undefined / . - undefined, undefined
Forschungsvorhaben
Organisationseinheiten
Zeitschriftenheft
Datensätze
Zitieren
ISO 690SCHREIBER, Falk, Gary D. BADER, Martin GOLEBIEWSKI, Michael HUCKA, Benjamin KORMEIER, Nicolas LE NOVÈRE, Chris MYERS, David NICKERSON, Björn SOMMER, Dagmar WALTEMATH, 2015. Specifications of Standards in Systems and Synthetic Biology. In: Journal of integrative bioinformatics. 2015, 12(2), 258. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2015-258
BibTex
@article{Schreiber2015-09-04Speci-38318,
  year={2015},
  doi={10.2390/biecoll-jib-2015-258},
  title={Specifications of Standards in Systems and Synthetic Biology},
  number={2},
  volume={12},
  journal={Journal of integrative bioinformatics},
  author={Schreiber, Falk and Bader, Gary D. and Golebiewski, Martin and Hucka, Michael and Kormeier, Benjamin and Le Novère, Nicolas and Myers, Chris and Nickerson, David and Sommer, Björn and Waltemath, Dagmar},
  note={Article Number: 258}
}
RDF
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/38318">
    <dc:creator>Kormeier, Benjamin</dc:creator>
    <dc:creator>Hucka, Michael</dc:creator>
    <dcterms:issued>2015-09-04</dcterms:issued>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-04-04T14:20:23Z</dcterms:available>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/38318"/>
    <dc:contributor>Kormeier, Benjamin</dc:contributor>
    <dcterms:abstract xml:lang="eng">Standards shape our everyday life. From nuts and bolts to electronic devices and technological processes, standardised products and processes are all around us. Standards have technological and economic benefits, such as making information exchange, production, and services more efficient. However, novel, innovative areas often either lack proper standards, or documents about standards in these areas are not available from a centralised platform or formal body (such as the International Standardisation Organisation). Systems and synthetic biology is a relatively novel area, and it is only in the last decade that the standardisation of data, information, and models related to systems and synthetic biology has become a community-wide effort. Several open standards have been established and are under continuous development as a community initiative. COMBINE, the &amp;lsquo;COmputational Modeling in BIology&amp;rsquo; NEtwork has been established as an umbrella initiative to coordinate and promote the development of the various community standards and formats for computational models. There are yearly two meeting, HARMONY (Hackathons on Resources for Modeling in Biology), Hackathon-type meetings with a focus on development of the support for standards, and COMBINE forums, workshop-style events with oral presentations, discussion, poster, and breakout sessions for further developing the standards. For more information see http://co.mbine.org/. So far the different standards were published and made accessible through the standards&amp;rsquo; web- pages or preprint services. The aim of this special issue is to provide a single, easily accessible and citable platform for the publication of standards in systems and synthetic biology. This special issue is intended to serve as a central access point to standards and related initiatives in systems and synthetic biology, it will be published annually to provide an opportunity for standard development groups to communicate updated specifications.</dcterms:abstract>
    <dc:contributor>Waltemath, Dagmar</dc:contributor>
    <dc:contributor>Myers, Chris</dc:contributor>
    <dc:contributor>Schreiber, Falk</dc:contributor>
    <dc:creator>Nickerson, David</dc:creator>
    <dc:contributor>Hucka, Michael</dc:contributor>
    <dc:contributor>Sommer, Björn</dc:contributor>
    <dc:creator>Bader, Gary D.</dc:creator>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-04-04T14:20:23Z</dc:date>
    <dc:contributor>Golebiewski, Martin</dc:contributor>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dc:creator>Le Novère, Nicolas</dc:creator>
    <dc:language>eng</dc:language>
    <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/38318/1/K%c3%b6nig_2-17stzd3juay6n4.pdf"/>
    <dc:creator>Golebiewski, Martin</dc:creator>
    <dc:contributor>Le Novère, Nicolas</dc:contributor>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:creator>Myers, Chris</dc:creator>
    <dc:creator>Schreiber, Falk</dc:creator>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dc:creator>Waltemath, Dagmar</dc:creator>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dcterms:title>Specifications of Standards in Systems and Synthetic Biology</dcterms:title>
    <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/38318/1/K%c3%b6nig_2-17stzd3juay6n4.pdf"/>
    <dc:creator>Sommer, Björn</dc:creator>
    <dc:contributor>Nickerson, David</dc:contributor>
    <dc:contributor>Bader, Gary D.</dc:contributor>
  </rdf:Description>
</rdf:RDF>
Interner Vermerk
xmlui.Submission.submit.DescribeStep.inputForms.label.kops_note_fromSubmitter
Kontakt
URL der Originalveröffentl.
Prüfdatum der URL
Prüfungsdatum der Dissertation
Finanzierungsart
Kommentar zur Publikation
Allianzlizenz
Corresponding Authors der Uni Konstanz vorhanden
Internationale Co-Autor:innen
Universitätsbibliographie
Nein
Begutachtet
Diese Publikation teilen