Publikation: Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios
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Journal of Integrative Bioinformatics. De Gruyter. 2016, 13(4), S. 47-58. eISSN 1613-4516. Verfügbar unter: doi: 10.1515/jib-2016-298
Zusammenfassung
The CELLmicrocosmos 4.2 PathwayIntegration (CmPI) is a tool which provides hybriddimensional visualization and analysis of intracellular protein and gene localizations in the context of a virtual 3D environment. This tool is developed based on Java/Java3D/JOGL and provides a standalone application compatible to all relevant operating systems. However, it requires Java and the local installation of the software. Here we present the prototype of an alternative web-based visualization approach, using Three.js and D3.js. In this way it is possible to visualize and explore CmPI-generated localization scenarios including networks mapped to 3D cell components by just providing a URL to a collaboration partner. This publication describes the integration of the different technologies – Three.js, D3.js and PHP – as well as an application case: a localization scenario of the citrate cycle. The CmPI web viewer is available at: http://CmPIweb.CELLmicrocosmos.org.
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KOVANCI, Gökhan, Mehmood GHAFFAR, Björn SOMMER, 2016. Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios. In: Journal of Integrative Bioinformatics. De Gruyter. 2016, 13(4), S. 47-58. eISSN 1613-4516. Verfügbar unter: doi: 10.1515/jib-2016-298BibTex
@article{Kovanci2016-10-01Webba-73540,
title={Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios},
year={2016},
doi={10.1515/jib-2016-298},
number={4},
volume={13},
journal={Journal of Integrative Bioinformatics},
pages={47--58},
author={Kovanci, Gökhan and Ghaffar, Mehmood and Sommer, Björn}
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<dcterms:abstract>The CELLmicrocosmos 4.2 PathwayIntegration (CmPI) is a tool which provides hybriddimensional visualization and analysis of intracellular protein and gene localizations in the context of a virtual 3D environment. This tool is developed based on Java/Java3D/JOGL and provides a standalone application compatible to all relevant operating systems. However, it requires Java and the local installation of the software. Here we present the prototype of an alternative web-based visualization approach, using Three.js and D3.js. In this way it is possible to visualize and explore CmPI-generated localization scenarios including networks mapped to 3D cell components by just providing a URL to a collaboration partner. This publication describes the integration of the different technologies – Three.js, D3.js and PHP – as well as an application case: a localization scenario of the citrate cycle. The CmPI web viewer is available at: http://CmPIweb.CELLmicrocosmos.org.</dcterms:abstract>
<dcterms:title>Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios</dcterms:title>
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