Publikation:

Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

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Datum

2023

Autor:innen

Belser, Caroline
Poulain, Julie
Labadie, Karine
Gavory, Frederick
Alberti, Adriana
Guy, Julie
Carradec, Quentin
et al.

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Published

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Scientific Data. Springer. 2023, 10, 326. eISSN 2052-4463. Available under: doi: 10.1038/s41597-023-02204-0

Zusammenfassung

Coral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the coral host organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene.

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570 Biowissenschaften, Biologie

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ISO 690BELSER, Caroline, Julie POULAIN, Karine LABADIE, Frederick GAVORY, Adriana ALBERTI, Julie GUY, Quentin CARRADEC, Christian R. VOOLSTRA, Benjamin C. C. HUME, Gabriela PERNA, 2023. Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition. In: Scientific Data. Springer. 2023, 10, 326. eISSN 2052-4463. Available under: doi: 10.1038/s41597-023-02204-0
BibTex
@article{Belser2023Integ-67454,
  year={2023},
  doi={10.1038/s41597-023-02204-0},
  title={Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition},
  volume={10},
  journal={Scientific Data},
  author={Belser, Caroline and Poulain, Julie and Labadie, Karine and Gavory, Frederick and Alberti, Adriana and Guy, Julie and Carradec, Quentin and Voolstra, Christian R. and Hume, Benjamin C. C. and Perna, Gabriela},
  note={Article Number: 326}
}
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