Publikation:

Plant Metabolic Pathways : Databases and Pipeline for Stoichiometric Analysis

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Datum

2012

Autor:innen

Grafahrend-Belau, Eva
Junker, Björn H.

Herausgeber:innen

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https://doi.org/10.1007/978-94-007-4749-4_17
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Published

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AGRAWAL, Ganesh K., ed., Randeep RAKWAL, ed.. Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield. Dordrecht: Springer Netherlands, 2012, pp. 345-366. ISBN 978-94-007-4748-7. Available under: doi: 10.1007/978-94-007-4749-4_17

Zusammenfassung

Mathematical modeling of plant metabolism offers new approaches to improve the understanding of complex biological processes. In this chapter an overview of resources and tools available for the reconstruction of stoichiometric models and their constraint-based analysis is given, focusing on plant metabolic pathways. To facilitate and support the modeling of metabolism, a pipeline for the constraint-based analysis of crop plant metabolic models is described and the proposed framework is applied in a case study of storage metabolism in developing barley seeds.

Zusammenfassung in einer weiteren Sprache

Fachgebiet (DDC)
004 Informatik

Schlagwörter

Constraint-based analysis (CBA), CBA software, Crop plant metabolism, Flux balance analysis, Modeling pipeline, Plant metabolic pathway databases

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ISO 690GRAFAHREND-BELAU, Eva, Björn H. JUNKER, Falk SCHREIBER, 2012. Plant Metabolic Pathways : Databases and Pipeline for Stoichiometric Analysis. In: AGRAWAL, Ganesh K., ed., Randeep RAKWAL, ed.. Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield. Dordrecht: Springer Netherlands, 2012, pp. 345-366. ISBN 978-94-007-4748-7. Available under: doi: 10.1007/978-94-007-4749-4_17
BibTex
@incollection{GrafahrendBelau2012-12-07Plant-38593,
  year={2012},
  doi={10.1007/978-94-007-4749-4_17},
  title={Plant Metabolic Pathways : Databases and Pipeline for Stoichiometric Analysis},
  isbn={978-94-007-4748-7},
  publisher={Springer Netherlands},
  address={Dordrecht},
  booktitle={Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield},
  pages={345--366},
  editor={Agrawal, Ganesh K. and Rakwal, Randeep},
  author={Grafahrend-Belau, Eva and Junker, Björn H. and Schreiber, Falk}
}
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