Publikation: Integration and virtual reality exploration of biomedical data with CmPI and VANTED
Dateien
Datum
Autor:innen
Herausgeber:innen
ISSN der Zeitschrift
Electronic ISSN
ISBN
Bibliografische Daten
Verlag
Schriftenreihe
Auflagebezeichnung
DOI (zitierfähiger Link)
Internationale Patentnummer
Angaben zur Forschungsförderung
Projekt
Open Access-Veröffentlichung
Core Facility der Universität Konstanz
Titel in einer weiteren Sprache
Publikationstyp
Publikationsstatus
Erschienen in
Zusammenfassung
Modelling and analysis of metabolic processes is an established research field in Computational Systems Biology and Medicine. There are many different approaches for modelling as well as for visualization, but often these methods ignore the subcellular localization of proteins, enzymes and transporters involved in the metabolic processes. Over the recent years, we developed two tools: CELLmicrocosmos 4 PathwayIntegration (CmPI) and VANTED. CmPI is used to analyse, visualize and explore potential subcellular localizations in a cell environment. CmPI provides import capabilities for metabolic pathways and simple visualization of directed networks showing the enzyme-compound relationships inside this environment in 2D as well as 3D. VANTED allows to analyse and visualize biological networks, to integrate data into these networks and simulate their dynamics. Here, we will discuss future perspectives of these approaches and how to extend the capabilities of CmPI's localization method to provide a) complex modelling, visualization and exploration of metabolic networks in combination with -omics data, and b) immersive analytics of the spatially distributed networks using different Virtual Reality-based technologies. We discuss the prototypic integration of CmPI with VANTED and the large display visualization framework Omegalib in combination with a semi-immersive monitor zSpace™ and CAVE2™.
Zusammenfassung in einer weiteren Sprache
Fachgebiet (DDC)
Schlagwörter
Konferenz
Rezension
Zitieren
ISO 690
SCHREIBER, Falk, Björn SOMMER, 2017. Integration and virtual reality exploration of biomedical data with CmPI and VANTED. In: it - Information Technology. 2017, 59(4), pp. 181-190. ISSN 0013-5720. eISSN 2196-7032. Available under: doi: 10.1515/itit-2016-0030BibTex
@article{Schreiber2017-01-28Integ-36843,
year={2017},
doi={10.1515/itit-2016-0030},
title={Integration and virtual reality exploration of biomedical data with CmPI and VANTED},
number={4},
volume={59},
issn={0013-5720},
journal={it - Information Technology},
pages={181--190},
author={Schreiber, Falk and Sommer, Björn}
}RDF
<rdf:RDF
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:bibo="http://purl.org/ontology/bibo/"
xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:void="http://rdfs.org/ns/void#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#" >
<rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36843">
<dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-01-19T11:06:54Z</dcterms:available>
<dc:creator>Sommer, Björn</dc:creator>
<void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
<dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
<dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
<dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-01-19T11:06:54Z</dc:date>
<dc:creator>Schreiber, Falk</dc:creator>
<dcterms:title>Integration and virtual reality exploration of biomedical data with CmPI and VANTED</dcterms:title>
<dc:contributor>Sommer, Björn</dc:contributor>
<dcterms:issued>2017-01-28</dcterms:issued>
<dc:language>eng</dc:language>
<dcterms:abstract xml:lang="eng">Modelling and analysis of metabolic processes is an established research field in Computational Systems Biology and Medicine. There are many different approaches for modelling as well as for visualization, but often these methods ignore the subcellular localization of proteins, enzymes and transporters involved in the metabolic processes. Over the recent years, we developed two tools: CELLmicrocosmos 4 PathwayIntegration (CmPI) and VANTED. CmPI is used to analyse, visualize and explore potential subcellular localizations in a cell environment. CmPI provides import capabilities for metabolic pathways and simple visualization of directed networks showing the enzyme-compound relationships inside this environment in 2D as well as 3D. VANTED allows to analyse and visualize biological networks, to integrate data into these networks and simulate their dynamics. Here, we will discuss future perspectives of these approaches and how to extend the capabilities of CmPI's localization method to provide a) complex modelling, visualization and exploration of metabolic networks in combination with -omics data, and b) immersive analytics of the spatially distributed networks using different Virtual Reality-based technologies. We discuss the prototypic integration of CmPI with VANTED and the large display visualization framework Omegalib in combination with a semi-immersive monitor zSpace™ and CAVE2™.</dcterms:abstract>
<foaf:homepage rdf:resource="http://localhost:8080/"/>
<dc:contributor>Schreiber, Falk</dc:contributor>
<bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/36843"/>
</rdf:Description>
</rdf:RDF>
