Publikation: Visual Understanding of Metabolic Pathways Across Organisms using Layout in Two and a Half Dimensions
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We propose a method for visualizing a set of related metabolic pathways across organisms using 2 1/2 dimensional graph visualization. Interdependent,two-dimensional layouts of each pathway are stacked on top of each other so that biologists get a full picture of subtle and significant differences among the pathways. The (dis)similarities between pathways are expressed by the Hamming distances of the underlying graphs which are used to compute a stacking order for the pathways. Layouts are determined by a global layout of the union of all pathway graphs using a variant of the proven Sugiyama approach for layered graph drawing. Our variant layout approach allows edges to cross if they appear in different graphs.
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BRANDES, Ulrik, Tim DWYER, Falk SCHREIBER, 2004. Visual Understanding of Metabolic Pathways Across Organisms using Layout in Two and a Half Dimensions. In: Journal of Integrative Bioinformatics. 2004, 1(1), 2. Available under: doi: 10.2390/biecoll-jib-2004-2BibTex
@article{Brandes2004Visua-5694, year={2004}, doi={10.2390/biecoll-jib-2004-2}, title={Visual Understanding of Metabolic Pathways Across Organisms using Layout in Two and a Half Dimensions}, number={1}, volume={1}, journal={Journal of Integrative Bioinformatics}, author={Brandes, Ulrik and Dwyer, Tim and Schreiber, Falk}, note={Article Number: 2} }
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