Publikation: Optimal leaf ordering for two and a half dimensional phylogenetic tree visualisation
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Datum
2004
Autor:innen
Dwyer, Tim
Herausgeber:innen
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CHURCHER, Neville, ed. and others. Information visualisation 2004 : proceedings of the Australasian Symposium on Information Visualisation (InVis.au 2004), Christchurch, New Zealand, January 2004. Sydney: Australian Computer Society, 2004, pp. 109-115. Conferences in research and practice in information technology. 35. ISSN 1445-1336. ISBN 1-920682-17-1
Zusammenfassung
Two and a half dimensional graph visualisation is the stacking of a set of related graphs, each drawn in a plane, into the third dimension to support visual comparison. A new aesthetic criterion is introduced for the 2 1/2D visualisation of sets of related phylogenetic trees. This aesthetic requires that the number of crossings between edges linking similar nodes in adjacent trees is minimised allowing a user to easily track the position of a particular species through its lifetime in the stack. We introduce an algorithm for efficiently minimising such crossings and discuss its complexity. Finally, we suggest a new "barrel" layout style which benefits from such crossing minimisation.
Zusammenfassung in einer weiteren Sprache
Fachgebiet (DDC)
004 Informatik
Schlagwörter
Phylogenetic Trees, Crossing Minimisation, Three Dimensional Visualisation, Two and a Half Dimensional Visualisation, Bioinformatics
Konferenz
APVis '04 Australasian Symposium on Information Visualisation, 23. Jan. 2004 - 24. Jan. 2004, Christchurch, New Zealand
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ISO 690
DWYER, Tim, Falk SCHREIBER, 2004. Optimal leaf ordering for two and a half dimensional phylogenetic tree visualisation. APVis '04 Australasian Symposium on Information Visualisation. Christchurch, New Zealand, 23. Jan. 2004 - 24. Jan. 2004. In: CHURCHER, Neville, ed. and others. Information visualisation 2004 : proceedings of the Australasian Symposium on Information Visualisation (InVis.au 2004), Christchurch, New Zealand, January 2004. Sydney: Australian Computer Society, 2004, pp. 109-115. Conferences in research and practice in information technology. 35. ISSN 1445-1336. ISBN 1-920682-17-1BibTex
@inproceedings{Dwyer2004Optim-40356,
year={2004},
title={Optimal leaf ordering for two and a half dimensional phylogenetic tree visualisation},
url={https://dl.acm.org/citation.cfm?id=1082114},
number={35},
isbn={1-920682-17-1},
issn={1445-1336},
publisher={Australian Computer Society},
address={Sydney},
series={Conferences in research and practice in information technology},
booktitle={Information visualisation 2004 : proceedings of the Australasian Symposium on Information Visualisation (InVis.au 2004), Christchurch, New Zealand, January 2004},
pages={109--115},
editor={Churcher, Neville},
author={Dwyer, Tim and Schreiber, Falk}
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<dcterms:abstract xml:lang="eng">Two and a half dimensional graph visualisation is the stacking of a set of related graphs, each drawn in a plane, into the third dimension to support visual comparison. A new aesthetic criterion is introduced for the 2 1/2D visualisation of sets of related phylogenetic trees. This aesthetic requires that the number of crossings between edges linking similar nodes in adjacent trees is minimised allowing a user to easily track the position of a particular species through its lifetime in the stack. We introduce an algorithm for efficiently minimising such crossings and discuss its complexity. Finally, we suggest a new "barrel" layout style which benefits from such crossing minimisation.</dcterms:abstract>
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Prüfdatum der URL
2017-10-17
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