Publikation:

Flux Visualization Using VANTED/FluxMap

Vorschaubild

Dateien

Zu diesem Dokument gibt es keine Dateien.

Datum

2014

Autor:innen

Krach, Christian
Junker, Astrid
Rohn, Hendrik
Junker, Björn H.

Herausgeber:innen

Kontakt

ISSN der Zeitschrift

Electronic ISSN

ISBN

Bibliografische Daten

Verlag

Schriftenreihe

Auflagebezeichnung

URI (zitierfähiger Link)
DOI (zitierfähiger Link)
https://doi.org/10.1007/978-1-4939-1170-7_14
ArXiv-ID

Internationale Patentnummer

Angaben zur Forschungsförderung

Projekt

Open Access-Veröffentlichung

Sammlungen

Informatik und Informationswissenschaft: Publikationen
Core Facility der Universität Konstanz

Gesperrt bis

Titel in einer weiteren Sprache

Publikationstyp
Beitrag zu einem Sammelband
Publikationsstatus
Published

Erschienen in

KRÖMER, Jens O., ed., Lars K. NIELSEN, ed., Lars M. BLANK, ed.. Metabolic Flux Analysis. New York, NY: Humana Press, 2014, pp. 225-233. Methods in Molecular Biology. 1191. ISBN 978-1-4939-1169-1. Available under: doi: 10.1007/978-1-4939-1170-7_14

Zusammenfassung

The calculation of metabolic fluxes has been shown to be a valuable asset in systems biology. Several procedures are commonly used to achieve this. Flux balance analyses or metabolic flux analyses usually result in a list of reaction rates (fluxes) provided in a spreadsheet format. This makes it difficult to quickly assess general characteristics of the solution. A fast and easy mapping of these results to a graphical map template facilitates an easy visual data inspection. Here, we describe a protocol that helps in setting up user-specific network templates, mapping flux results to it, and creating multiple exportable flux maps at one time.

Zusammenfassung in einer weiteren Sprache

Fachgebiet (DDC)
004 Informatik

Schlagwörter

Konferenz

Rezension
undefined / . - undefined, undefined

Forschungsvorhaben

Organisationseinheiten

Zeitschriftenheft

Zugehörige Datensätze in KOPS

Zitieren

ISO 690KRACH, Christian, Astrid JUNKER, Hendrik ROHN, Falk SCHREIBER, Björn H. JUNKER, 2014. Flux Visualization Using VANTED/FluxMap. In: KRÖMER, Jens O., ed., Lars K. NIELSEN, ed., Lars M. BLANK, ed.. Metabolic Flux Analysis. New York, NY: Humana Press, 2014, pp. 225-233. Methods in Molecular Biology. 1191. ISBN 978-1-4939-1169-1. Available under: doi: 10.1007/978-1-4939-1170-7_14
BibTex
@incollection{Krach2014-07-12Visua-38441,
  year={2014},
  doi={10.1007/978-1-4939-1170-7_14},
  title={Flux Visualization Using VANTED/FluxMap},
  number={1191},
  isbn={978-1-4939-1169-1},
  publisher={Humana Press},
  address={New York, NY},
  series={Methods in Molecular Biology},
  booktitle={Metabolic Flux Analysis},
  pages={225--233},
  editor={Krömer, Jens O. and Nielsen, Lars K. and Blank, Lars M.},
  author={Krach, Christian and Junker, Astrid and Rohn, Hendrik and Schreiber, Falk and Junker, Björn H.}
}
RDF
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/38441">
    <dc:contributor>Junker, Björn H.</dc:contributor>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:creator>Junker, Astrid</dc:creator>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/38441"/>
    <dcterms:abstract xml:lang="eng">The calculation of metabolic fluxes has been shown to be a valuable asset in systems biology. Several procedures are commonly used to achieve this. Flux balance analyses or metabolic flux analyses usually result in a list of reaction rates (fluxes) provided in a spreadsheet format. This makes it difficult to quickly assess general characteristics of the solution. A fast and easy mapping of these results to a graphical map template facilitates an easy visual data inspection. Here, we describe a protocol that helps in setting up user-specific network templates, mapping flux results to it, and creating multiple exportable flux maps at one time.</dcterms:abstract>
    <dc:contributor>Schreiber, Falk</dc:contributor>
    <dc:creator>Rohn, Hendrik</dc:creator>
    <dc:contributor>Krach, Christian</dc:contributor>
    <dcterms:title>Flux Visualization Using VANTED/FluxMap</dcterms:title>
    <dc:creator>Krach, Christian</dc:creator>
    <dc:contributor>Rohn, Hendrik</dc:contributor>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:creator>Schreiber, Falk</dc:creator>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-04-07T13:36:48Z</dcterms:available>
    <dc:language>eng</dc:language>
    <dcterms:issued>2014-07-12</dcterms:issued>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dc:creator>Junker, Björn H.</dc:creator>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dc:contributor>Junker, Astrid</dc:contributor>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-04-07T13:36:48Z</dc:date>
  </rdf:Description>
</rdf:RDF>

Interner Vermerk

xmlui.Submission.submit.DescribeStep.inputForms.label.kops_note_fromSubmitter

Kontakt
URL der Originalveröffentl.

Prüfdatum der URL

Prüfungsdatum der Dissertation

Finanzierungsart

Kommentar zur Publikation

Allianzlizenz
Corresponding Authors der Uni Konstanz vorhanden
Internationale Co-Autor:innen
Universitätsbibliographie
Nein
Begutachtet
Diese Publikation teilen