2.5 D visualisation of overlapping biological networks

Fung, David C. Y.; Hong, Seok-Hee; Koschützki, Dirk; Schreiber, Falk; Xu, Kai

2.5 D visualisation of overlapping biological networks

Dateien

Zu diesem Dokument gibt es keine Dateien.

Datum

2008

Autor:innen

Fung, David C. Y.

Hong, Seok-Hee

Koschützki, Dirk

Schreiber, Falk

Xu, Kai

DOI (zitierfähiger Link)

https://doi.org/10.2390/biecoll-jib-2008-90

Sammlungen

Informatik und Informationswissenschaft

Publikationstyp

Zeitschriftenartikel

Publikationsstatus

Published

Erschienen in

Journal of integrative bioinformatics : JIB. 2008, 5(1), 90. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2008-90

Zusammenfassung

Biological data is often structured in the form of complex interconnected networks such as protein interaction and metabolic networks. In this paper, we investigate a new problem of visualising such overlapping biological networks. Two networks overlap if they share some nodes and edges. We present an approach for constructing visualisations of two overlapping networks, based on a restricted three dimensional representation. More specifically, we use three parallel two dimensional planes placed in three dimensions to represent overlapping networks: one for each network (the top and the bottom planes) and one for the overlapping part (in the middle plane).
Our method aims to achieve both drawing aesthetics (or conventions) for each individual network, and highlighting the intersection part by them. Using three biological datasets, we evaluate our visualisation design with the aim to test whether overlapping networks can support the visual analysis of heterogeneous and yet interconnected networks.

Fachgebiet (DDC)

004 Informatik

Zitieren

ISO 690

FUNG, David C. Y., Seok-Hee HONG, Dirk KOSCHÜTZKI, Falk SCHREIBER, Kai XU, 2008. 2.5 D visualisation of overlapping biological networks. In: Journal of integrative bioinformatics : JIB. 2008, 5(1), 90. eISSN 1613-4516. Available under: doi: 10.2390/biecoll-jib-2008-90

BibTex

@article{Fung2008-11-10visua-40480,
  year={2008},
  doi={10.2390/biecoll-jib-2008-90},
  title={2.5 D visualisation of overlapping biological networks},
  number={1},
  volume={5},
  journal={Journal of integrative bioinformatics : JIB},
  author={Fung, David C. Y. and Hong, Seok-Hee and Koschützki, Dirk and Schreiber, Falk and Xu, Kai},
  note={Article Number: 90}
}

RDF

<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/40480">
    <dcterms:abstract xml:lang="eng">Biological data is often structured in the form of complex interconnected networks such as protein interaction and metabolic networks. In this paper, we investigate a new problem of visualising such overlapping biological networks. Two networks overlap if they share some nodes and edges. We present an approach for constructing visualisations of two overlapping networks, based on a restricted three dimensional representation. More specifically, we use three parallel two dimensional planes placed in three dimensions to represent overlapping networks: one for each network (the top and the bottom planes) and one for the overlapping part (in the middle plane).&lt;br /&gt;Our method aims to achieve both drawing aesthetics (or conventions) for each individual network, and highlighting the intersection part by them. Using three biological datasets, we evaluate our visualisation design with the aim to test whether overlapping networks can support the visual analysis of heterogeneous and yet interconnected networks.</dcterms:abstract>
    <dc:language>eng</dc:language>
    <dc:creator>Fung, David C. Y.</dc:creator>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:contributor>Koschützki, Dirk</dc:contributor>
    <dc:creator>Hong, Seok-Hee</dc:creator>
    <dc:contributor>Schreiber, Falk</dc:contributor>
    <dc:contributor>Hong, Seok-Hee</dc:contributor>
    <dc:contributor>Fung, David C. Y.</dc:contributor>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-11-03T10:44:18Z</dc:date>
    <dcterms:title>2.5 D visualisation of overlapping biological networks</dcterms:title>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/40480"/>
    <dc:creator>Koschützki, Dirk</dc:creator>
    <dc:contributor>Xu, Kai</dc:contributor>
    <dc:creator>Xu, Kai</dc:creator>
    <dc:creator>Schreiber, Falk</dc:creator>
    <dcterms:issued>2008-11-10</dcterms:issued>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-11-03T10:44:18Z</dcterms:available>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
  </rdf:Description>
</rdf:RDF>

Universitätsbibliographie

Nein