Confirmation and variability of the Allee effect in Dictyostelium discoideum cell populations, possible role of chemical signaling within cell clusters

Lade...
Vorschaubild
Dateien
Segota_2-c27ue3dy5ezt5.pdf
Segota_2-c27ue3dy5ezt5.pdfGröße: 1.96 MBDownloads: 24
Datum
2022
Autor:innen
Segota, Igor
Edwards, Matthew M.
Campello, Arthur
Rappazzo, Brendan H.
Wang, Xiaoning
Zhou, Xiao-Qiao
Rachakonda, Archana
Daie, Kayvon
Franck, Carl
et al.
Herausgeber:innen
Kontakt
ISSN der Zeitschrift
Electronic ISSN
ISBN
Bibliografische Daten
Verlag
Schriftenreihe
Auflagebezeichnung
ArXiv-ID
Internationale Patentnummer
Angaben zur Forschungsförderung
Projekt
Open Access-Veröffentlichung
Open Access Green
Sammlungen
Core Facility der Universität Konstanz
Gesperrt bis
Titel in einer weiteren Sprache
Publikationstyp
Zeitschriftenartikel
Publikationsstatus
Published
Erschienen in
Physical Biology. Institute of Physics Publishing (IOP). 2022, 19(2), 026002. ISSN 1478-3967. eISSN 1478-3975. Available under: doi: 10.1088/1478-3975/ac4613
Zusammenfassung

In studies of the unicellular eukaryote Dictyostelium discoideum, many have anecdotally observed that cell dilution below a certain 'threshold density' causes cells to undergo a period of slow growth (lag). However, little is documented about the slow growth phase and the reason for different growth dynamics below and above this threshold density. In this paper, we extend and correct our earlier work to report an extensive set of experiments, including the use of new cell counting technology, that set this slow-to-fast growth transition on a much firmer biological basis. We show that dilution below a certain density (around 104cells ml-1) causes cells to grow slower on average and exhibit a large degree of variability: sometimes a sample does not lag at all, while sometimes it takes many moderate density cell cycle times to recover back to fast growth. We perform conditioned media experiments to demonstrate that a chemical signal mediates this endogenous phenomenon. Finally, we argue that while simple models involving fluid transport of signal molecules or cluster-based signaling explain typical behavior, they do not capture the high degree of variability between samples but nevertheless favor an intra-cluster mechanism.

Zusammenfassung in einer weiteren Sprache
Fachgebiet (DDC)
570 Biowissenschaften, Biologie
Schlagwörter
Konferenz
Rezension
undefined / . - undefined, undefined
Forschungsvorhaben
Organisationseinheiten
Zeitschriftenheft
Datensätze
Zitieren
ISO 690SEGOTA, Igor, Matthew M. EDWARDS, Arthur CAMPELLO, Brendan H. RAPPAZZO, Xiaoning WANG, Ariana STRANDBURG-PESHKIN, Xiao-Qiao ZHOU, Archana RACHAKONDA, Kayvon DAIE, Carl FRANCK, 2022. Confirmation and variability of the Allee effect in Dictyostelium discoideum cell populations, possible role of chemical signaling within cell clusters. In: Physical Biology. Institute of Physics Publishing (IOP). 2022, 19(2), 026002. ISSN 1478-3967. eISSN 1478-3975. Available under: doi: 10.1088/1478-3975/ac4613
BibTex
@article{Segota2022Confi-58196,
  year={2022},
  doi={10.1088/1478-3975/ac4613},
  title={Confirmation and variability of the Allee effect in Dictyostelium discoideum cell populations, possible role of chemical signaling within cell clusters},
  number={2},
  volume={19},
  issn={1478-3967},
  journal={Physical Biology},
  author={Segota, Igor and Edwards, Matthew M. and Campello, Arthur and Rappazzo, Brendan H. and Wang, Xiaoning and Strandburg-Peshkin, Ariana and Zhou, Xiao-Qiao and Rachakonda, Archana and Daie, Kayvon and Franck, Carl},
  note={Article Number: 026002}
}
RDF
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/58196">
    <dc:contributor>Wang, Xiaoning</dc:contributor>
    <dc:creator>Zhou, Xiao-Qiao</dc:creator>
    <dcterms:title>Confirmation and variability of the Allee effect in Dictyostelium discoideum cell populations, possible role of chemical signaling within cell clusters</dcterms:title>
    <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/58196/1/Segota_2-c27ue3dy5ezt5.pdf"/>
    <dc:contributor>Franck, Carl</dc:contributor>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/28"/>
    <dc:creator>Franck, Carl</dc:creator>
    <dcterms:rights rdf:resource="https://rightsstatements.org/page/InC/1.0/"/>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/28"/>
    <dc:contributor>Rappazzo, Brendan H.</dc:contributor>
    <dc:rights>terms-of-use</dc:rights>
    <dc:creator>Edwards, Matthew M.</dc:creator>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2022-07-28T07:18:07Z</dcterms:available>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dc:creator>Campello, Arthur</dc:creator>
    <dc:creator>Segota, Igor</dc:creator>
    <dc:creator>Strandburg-Peshkin, Ariana</dc:creator>
    <dc:contributor>Edwards, Matthew M.</dc:contributor>
    <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/58196/1/Segota_2-c27ue3dy5ezt5.pdf"/>
    <dcterms:abstract xml:lang="eng">In studies of the unicellular eukaryote Dictyostelium discoideum, many have anecdotally observed that cell dilution below a certain 'threshold density' causes cells to undergo a period of slow growth (lag). However, little is documented about the slow growth phase and the reason for different growth dynamics below and above this threshold density. In this paper, we extend and correct our earlier work to report an extensive set of experiments, including the use of new cell counting technology, that set this slow-to-fast growth transition on a much firmer biological basis. We show that dilution below a certain density (around 104cells ml-1) causes cells to grow slower on average and exhibit a large degree of variability: sometimes a sample does not lag at all, while sometimes it takes many moderate density cell cycle times to recover back to fast growth. We perform conditioned media experiments to demonstrate that a chemical signal mediates this endogenous phenomenon. Finally, we argue that while simple models involving fluid transport of signal molecules or cluster-based signaling explain typical behavior, they do not capture the high degree of variability between samples but nevertheless favor an intra-cluster mechanism.</dcterms:abstract>
    <dc:creator>Rachakonda, Archana</dc:creator>
    <dc:contributor>Rachakonda, Archana</dc:contributor>
    <dc:creator>Rappazzo, Brendan H.</dc:creator>
    <dcterms:issued>2022</dcterms:issued>
    <dc:language>eng</dc:language>
    <dc:contributor>Segota, Igor</dc:contributor>
    <dc:contributor>Daie, Kayvon</dc:contributor>
    <dc:contributor>Campello, Arthur</dc:contributor>
    <dc:creator>Wang, Xiaoning</dc:creator>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2022-07-28T07:18:07Z</dc:date>
    <dc:contributor>Zhou, Xiao-Qiao</dc:contributor>
    <dc:contributor>Strandburg-Peshkin, Ariana</dc:contributor>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/58196"/>
    <dc:creator>Daie, Kayvon</dc:creator>
  </rdf:Description>
</rdf:RDF>
Interner Vermerk
xmlui.Submission.submit.DescribeStep.inputForms.label.kops_note_fromSubmitter
Kontakt
URL der Originalveröffentl.
Prüfdatum der URL
Prüfungsdatum der Dissertation
Finanzierungsart
Kommentar zur Publikation
Allianzlizenz
Corresponding Authors der Uni Konstanz vorhanden
Internationale Co-Autor:innen
Universitätsbibliographie
Ja
Begutachtet
Ja
Diese Publikation teilen