DaTo : an atlas of biological databases and tools

Lade...
Vorschaubild
Dateien
Li_2-91754opp1fzz6.pdf
Li_2-91754opp1fzz6.pdfGröße: 2.76 MBDownloads: 263
Datum
2016
Autor:innen
Li, Qilin
Zhou, Yincong
Jiao, Yingmin
Zhang, Zhao
Bai, Lin
Tong, Li
Yang, Xiong
Hofestädt, Ralf
Chen, Ming
Herausgeber:innen
Kontakt
ISSN der Zeitschrift
Electronic ISSN
ISBN
Bibliografische Daten
Verlag
Schriftenreihe
Auflagebezeichnung
ArXiv-ID
Internationale Patentnummer
Link zur Lizenz
Angaben zur Forschungsförderung
Projekt
Open Access-Veröffentlichung
Open Access Gold
Core Facility der Universität Konstanz
Gesperrt bis
Titel in einer weiteren Sprache
Forschungsvorhaben
Organisationseinheiten
Zeitschriftenheft
Publikationstyp
Zeitschriftenartikel
Publikationsstatus
Published
Erschienen in
Zusammenfassung

This work presents DaTo, a semi-automatically generated world atlas of biological databases and tools. It extracts raw information from all PubMed articles which contain exact URLs in their abstract section, followed by a manual curation of the abstract and the URL accessibility. DaTo features a user-friendly query interface, providing extensible URL-related annotations, such as the status, the location and the country of the URL. A graphical interaction network browser has also been integrated into the DaTo web interface to facilitate exploration of the relationship between different tools and databases with respect to their ontology-based semantic similarity. Using DaTo, the geographical locations, the health statuses, as well as the journal associations were evaluated with respect to the historical development of bioinformatics tools and databases over the last 20 years. We hope it will inspire the biological community to gain a systematic insight into bioinformatics resources.

Zusammenfassung in einer weiteren Sprache
Fachgebiet (DDC)
004 Informatik
Schlagwörter
Konferenz
Rezension
undefined / . - undefined, undefined
Zitieren
ISO 690LI, Qilin, Yincong ZHOU, Yingmin JIAO, Zhao ZHANG, Lin BAI, Li TONG, Xiong YANG, Björn SOMMER, Ralf HOFESTÄDT, Ming CHEN, 2016. DaTo : an atlas of biological databases and tools. In: Journal of Integrative Bioinformatics. 2016, 13(4), 297. eISSN 1613-4516. Available under: doi: 10.1515/jib-2016-297
BibTex
@article{Li2016-06-01atlas-44742,
  year={2016},
  doi={10.1515/jib-2016-297},
  title={DaTo : an atlas of biological databases and tools},
  number={4},
  volume={13},
  journal={Journal of Integrative Bioinformatics},
  author={Li, Qilin and Zhou, Yincong and Jiao, Yingmin and Zhang, Zhao and Bai, Lin and Tong, Li and Yang, Xiong and Sommer, Björn and Hofestädt, Ralf and Chen, Ming},
  note={Article Number: 297}
}
RDF
<rdf:RDF
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:bibo="http://purl.org/ontology/bibo/"
    xmlns:dspace="http://digital-repositories.org/ontologies/dspace/0.1.0#"
    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:void="http://rdfs.org/ns/void#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#" > 
  <rdf:Description rdf:about="https://kops.uni-konstanz.de/server/rdf/resource/123456789/44742">
    <dc:contributor>Zhou, Yincong</dc:contributor>
    <dspace:isPartOfCollection rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:contributor>Sommer, Björn</dc:contributor>
    <dc:creator>Zhou, Yincong</dc:creator>
    <dc:contributor>Jiao, Yingmin</dc:contributor>
    <dcterms:available rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2019-01-28T11:03:48Z</dcterms:available>
    <dc:language>eng</dc:language>
    <dcterms:hasPart rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/44742/3/Li_2-91754opp1fzz6.pdf"/>
    <dc:creator>Yang, Xiong</dc:creator>
    <dc:creator>Hofestädt, Ralf</dc:creator>
    <dc:contributor>Tong, Li</dc:contributor>
    <dc:creator>Li, Qilin</dc:creator>
    <dc:creator>Tong, Li</dc:creator>
    <dc:creator>Zhang, Zhao</dc:creator>
    <dc:creator>Sommer, Björn</dc:creator>
    <dc:creator>Chen, Ming</dc:creator>
    <dc:rights>Attribution-NonCommercial-NoDerivatives 4.0 International</dc:rights>
    <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2019-01-28T11:03:48Z</dc:date>
    <void:sparqlEndpoint rdf:resource="http://localhost/fuseki/dspace/sparql"/>
    <dcterms:isPartOf rdf:resource="https://kops.uni-konstanz.de/server/rdf/resource/123456789/36"/>
    <dc:creator>Bai, Lin</dc:creator>
    <dc:contributor>Li, Qilin</dc:contributor>
    <dc:contributor>Yang, Xiong</dc:contributor>
    <foaf:homepage rdf:resource="http://localhost:8080/"/>
    <dcterms:title>DaTo : an atlas of biological databases and tools</dcterms:title>
    <bibo:uri rdf:resource="https://kops.uni-konstanz.de/handle/123456789/44742"/>
    <dspace:hasBitstream rdf:resource="https://kops.uni-konstanz.de/bitstream/123456789/44742/3/Li_2-91754opp1fzz6.pdf"/>
    <dcterms:issued>2016-06-01</dcterms:issued>
    <dcterms:abstract xml:lang="eng">This work presents DaTo, a semi-automatically generated world atlas of biological databases and tools. It extracts raw information from all PubMed articles which contain exact URLs in their abstract section, followed by a manual curation of the abstract and the URL accessibility. DaTo features a user-friendly query interface, providing extensible URL-related annotations, such as the status, the location and the country of the URL. A graphical interaction network browser has also been integrated into the DaTo web interface to facilitate exploration of the relationship between different tools and databases with respect to their ontology-based semantic similarity. Using DaTo, the geographical locations, the health statuses, as well as the journal associations were evaluated with respect to the historical development of bioinformatics tools and databases over the last 20 years. We hope it will inspire the biological community to gain a systematic insight into bioinformatics resources.</dcterms:abstract>
    <dc:contributor>Chen, Ming</dc:contributor>
    <dc:creator>Jiao, Yingmin</dc:creator>
    <dc:contributor>Zhang, Zhao</dc:contributor>
    <dc:contributor>Bai, Lin</dc:contributor>
    <dcterms:rights rdf:resource="http://creativecommons.org/licenses/by-nc-nd/4.0/"/>
    <dc:contributor>Hofestädt, Ralf</dc:contributor>
  </rdf:Description>
</rdf:RDF>
Interner Vermerk
xmlui.Submission.submit.DescribeStep.inputForms.label.kops_note_fromSubmitter
Kontakt
URL der Originalveröffentl.
Prüfdatum der URL
Prüfungsdatum der Dissertation
Finanzierungsart
Kommentar zur Publikation
Allianzlizenz
Corresponding Authors der Uni Konstanz vorhanden
Internationale Co-Autor:innen
Universitätsbibliographie
Ja
Begutachtet
Ja
Diese Publikation teilen