Publikation:

DaTo : an atlas of biological databases and tools

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Li_2-91754opp1fzz6.pdf
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Datum

2016

Autor:innen

Li, Qilin
Zhou, Yincong
Jiao, Yingmin
Zhang, Zhao
Bai, Lin
Tong, Li
Yang, Xiong
Hofestädt, Ralf
Chen, Ming

Herausgeber:innen

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ISBN

Bibliografische Daten

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URI (zitierfähiger Link)
http://nbn-resolving.de/urn:nbn:de:bsz:352-2-91754opp1fzz6
DOI (zitierfähiger Link)
https://doi.org/10.1515/jib-2016-297
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Internationale Patentnummer

Link zur Lizenz

CC BY-NC-ND 4.0

Angaben zur Forschungsförderung

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Open Access-Veröffentlichung
Open Access Gold

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Informatik und Informationswissenschaft: Publikationen
Core Facility der Universität Konstanz

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Titel in einer weiteren Sprache

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Published

Erschienen in

Journal of Integrative Bioinformatics. 2016, 13(4), 297. eISSN 1613-4516. Available under: doi: 10.1515/jib-2016-297

Zusammenfassung

This work presents DaTo, a semi-automatically generated world atlas of biological databases and tools. It extracts raw information from all PubMed articles which contain exact URLs in their abstract section, followed by a manual curation of the abstract and the URL accessibility. DaTo features a user-friendly query interface, providing extensible URL-related annotations, such as the status, the location and the country of the URL. A graphical interaction network browser has also been integrated into the DaTo web interface to facilitate exploration of the relationship between different tools and databases with respect to their ontology-based semantic similarity. Using DaTo, the geographical locations, the health statuses, as well as the journal associations were evaluated with respect to the historical development of bioinformatics tools and databases over the last 20 years. We hope it will inspire the biological community to gain a systematic insight into bioinformatics resources.

Zusammenfassung in einer weiteren Sprache

Fachgebiet (DDC)
004 Informatik

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Konferenz

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Forschungsvorhaben

Organisationseinheiten

Zeitschriftenheft

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Zitieren

ISO 690LI, Qilin, Yincong ZHOU, Yingmin JIAO, Zhao ZHANG, Lin BAI, Li TONG, Xiong YANG, Björn SOMMER, Ralf HOFESTÄDT, Ming CHEN, 2016. DaTo : an atlas of biological databases and tools. In: Journal of Integrative Bioinformatics. 2016, 13(4), 297. eISSN 1613-4516. Available under: doi: 10.1515/jib-2016-297
BibTex
@article{Li2016-06-01atlas-44742,
  year={2016},
  doi={10.1515/jib-2016-297},
  title={DaTo : an atlas of biological databases and tools},
  number={4},
  volume={13},
  journal={Journal of Integrative Bioinformatics},
  author={Li, Qilin and Zhou, Yincong and Jiao, Yingmin and Zhang, Zhao and Bai, Lin and Tong, Li and Yang, Xiong and Sommer, Björn and Hofestädt, Ralf and Chen, Ming},
  note={Article Number: 297}
}
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Interner Vermerk

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