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Paired refinement under control of PAIREF - examples

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Datum der Erstveröffentlichung

February 26, 2020

Autor:innen

Malý, Martin
Dohnálek, Jan
Kolenko, Petr

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Core Facility der Universität Konstanz
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Published

Zusammenfassung

This archive contains example runs of PAIREF - a tool for macromolecular crystallographers performing the paired refinement protocol. Program website: https://pairef.fjfi.cvut.cz/

Results of six data sets presented in the paper "Paired refinement under control of PAIREF" by M. Maly, K. Diederichs, J. Dohnalek, P. Kolenko (2020) are included.

  • simulated data for lysozyme from Gallus gallus (SIM)
  • measured data for thermolysin from Bacillus thermoproteolyticus (TL)
  • measured data for cysteine-bound complex of cysteine dioxygenase from Rattus norvegicus (CDO)
  • measured data for endothiapepsin from Cryphonectria parasitica in complex with fragment B53 (EP)
  • measured data for interferon gamma from Paralichthys olivaceus (POLI) measured data for bilirubin oxidase from Myrothecium verrucaria (BO)

Zusammenfassung in einer weiteren Sprache

Fachgebiet (DDC)
570 Biowissenschaften, Biologie

Schlagwörter

macromolecular crystallography, X-ray diffraction, paired refinement, software, resolution

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Publikation
Zeitschriftenartikel
Paired refinement under the control of PAIREF
(2020) Malý, Martin; Diederichs, Kay; Dohnálek, Jan; Kolenko, Petr
Erschienen in: IUCrJ. International Union of Crystallography (IUCr). 2020, 7(4), S. 681-692. eISSN 2052-2525. Verfügbar unter: doi: 10.1107/S2052252520005916
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ISO 690MALÝ, Martin, Kay DIEDERICHS, Jan DOHNÁLEK, Petr KOLENKO, 2020. Paired refinement under control of PAIREF - examples
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Results of six data sets presented in the paper "Paired refinement under control of PAIREF" by M. Maly, K. Diederichs, J. Dohnalek, P. Kolenko (2020) are included. 
- simulated data for lysozyme from Gallus gallus (SIM) 
- measured data for thermolysin from Bacillus thermoproteolyticus (TL) 
- measured data for cysteine-bound complex of cysteine dioxygenase from Rattus norvegicus (CDO) 
- measured data for endothiapepsin from Cryphonectria parasitica in complex with fragment B53 (EP) 
- measured data for interferon gamma from Paralichthys olivaceus (POLI) measured data for bilirubin oxidase from Myrothecium verrucaria (BO)</dcterms:abstract>
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