Detection and phylogenetic assessment of conserved synteny derived from whole genome duplications
| Type of Publication: | Contribution to a collection |
| URI (citable link): | http://nbn-resolving.de/urn:nbn:de:bsz:352-209040 |
| Author: | Kuraku, Shigehiro; Meyer, Axel |
| Year of publication: | 2012 |
| Published in: | Evolutionary Genomics / Anisimova, Maria (ed.). - Totowa, NJ : Humana Press, 2012. - (Methods in Molecular Biology ; 855). - pp. 385-395. - ISBN 978-1-61779-581-7 |
| Pubmed ID: | 22407717 |
| DOI (citable link): | https://dx.doi.org/10.1007/978-1-61779-582-4_14 |
| Summary: |
Identification of intragenomic conservation of gene compositions in multiple chromosomal segments led to evidence of whole genome (WGDs) duplications. The process by which WGDs have been maintained and decayed provides us with clues for understanding how the genome evolves. In this chapter, we summarize current understanding of phylogenetic distribution and evolutionary impact of WGDs, introduce basic procedures to detect conserved synteny, and discuss typical pitfalls, as well as biological insights.
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| Subject (DDC): | 570 Biosciences, Biology |
| Keywords: | Whole genome duplication, conserved synteny, chromosome rearrangement, differential gene loss, hidden paralogy |
| Link to License: | In Copyright |
| Bibliography of Konstanz: | Yes |
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KURAKU, Shigehiro, Axel MEYER, 2012. Detection and phylogenetic assessment of conserved synteny derived from whole genome duplications. In: ANISIMOVA, Maria, ed.. Evolutionary Genomics. Totowa, NJ:Humana Press, pp. 385-395. ISBN 978-1-61779-581-7. Available under: doi: 10.1007/978-1-61779-582-4_14
@incollection{Kuraku2012Detec-20904, title={Detection and phylogenetic assessment of conserved synteny derived from whole genome duplications}, year={2012}, doi={10.1007/978-1-61779-582-4_14}, number={855}, isbn={978-1-61779-581-7}, address={Totowa, NJ}, publisher={Humana Press}, series={Methods in Molecular Biology}, booktitle={Evolutionary Genomics}, pages={385--395}, editor={Anisimova, Maria}, author={Kuraku, Shigehiro and Meyer, Axel} }
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